View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13161_low_3 (Length: 507)

Name: NF13161_low_3
Description: NF13161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13161_low_3
NF13161_low_3
[»] chr6 (1 HSPs)
chr6 (17-507)||(525151-525640)
[»] chr7 (1 HSPs)
chr7 (19-381)||(22855645-22856002)
[»] chr2 (4 HSPs)
chr2 (394-493)||(32223968-32224067)
chr2 (391-436)||(21261605-21261650)
chr2 (31-155)||(32223625-32223749)
chr2 (31-77)||(21261963-21262009)
[»] chr3 (3 HSPs)
chr3 (390-436)||(6844726-6844772)
chr3 (389-445)||(5863789-5863845)
chr3 (31-77)||(6845106-6845152)
[»] chr1 (3 HSPs)
chr1 (391-436)||(47802177-47802222)
chr1 (389-484)||(34170773-34170868)
chr1 (31-77)||(47802535-47802581)
[»] chr5 (3 HSPs)
chr5 (389-484)||(15668356-15668451)
chr5 (389-445)||(41298657-41298713)
chr5 (35-76)||(41302319-41302360)
[»] chr8 (1 HSPs)
chr8 (393-435)||(10665722-10665764)


Alignment Details
Target: chr6 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 17 - 507
Target Start/End: Original strand, 525151 - 525640
Alignment:
Q  17 cacaatatatataaccaagtcattcgagtacaatcatcgacaaatatcacaaaccaacgaataccagaagcagtagcttttggggaaggcacccaaacat 116  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||| |||||||||    
T  525151 cacaatgtatataaccaagtcattcgagtacaatcatcgacaaatatcacaaaccaacgaataacagaaacaatagctattggggaaggcccccaaacat 525250  T
Q  117 cagagtggaccaatgaaaaaggaatattacttttattcaatctaattggataagatacacgatgatttttggataaaatacaagtattacattttagctc 216  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  525251 cagagtggaccaatgaaaaaggaatattacttttattcaagctaattggataagatacacgatgacttttggataaaatacaagtattgcattttagctc 525350  T
Q  217 tgtatcgtgtacatgagaaaataaatcaggtagtaaatgcttcatataaccaaaggatggatgccctaagcgatgatgccatagccatatttgtctttcc 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  525351 tgtatcgtgtacatgagaaaataaatcaggtagtaaatgcttcatataaccaaaggatggatgccccaagcgatgatgccatagccatatttgtctttcc 525450  T
Q  317 ttagtaccggtattgtgacgcatatgattgggtcttccagaactgaaatcatccatataatataannnnnnntctcttagtaccacgcccaatgatctcc 416  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  525451 ttagtaccggtattgtgacgcatatgattggctcttccagaactaaaatcatccatataatataa-cccccctctcttagtaccacgcccaatgatctcc 525549  T
Q  417 ttggtgagaatatcctgaagaagacaaaaggaaggataaattagtgcaacacaatttaactcttcagtgacttgacttacatatattaatt 507  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  525550 ttcgtgagaatatcctgaagaagacaaaaggaaggataaattagtgcaacacaatttaactcttcagtgacttgacttacagatatcaatt 525640  T

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Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 22856002 - 22855645
Alignment:
Q  19 caatatatataaccaagtcattcgagtacaatcatcgacaaatatcacaaaccaacgaataccagaagcagtagcttttggggaaggcacccaaacatca 118  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||| ||||||||||| |||||||||||    
T  22856002 caatgtatataaccaagtcattcgagtacaatcatcgacaaatatcacaaaccaacgaatggcagaaacagtagctattggggaaggcccccaaacatca 22855903  T
Q  119 gagtggaccaatgaaaaaggaatattacttttattcaatctaattggataagatacacgatgatttttggataaaatacaagtattacattttagctctg 218  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22855902 gagtggaccaatgaaaaaggaacattacttttattcaagctaattggataagatacacgatgatttttggataaaatacaagtattaaattttagctctg 22855803  T
Q  219 tatcgtgtacatgagaaaataaatcaggtagtaaatgcttcatataaccaaaggatggatgccctaagcgatgatgccatagccatatttgtctttcctt 318  Q
    ||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||| ||||||     ||||||||||||||||||||||| ||||||||    
T  22855802 tatcgtgtacatgtgaaaataaatcaagtagtaaatacttcatataaccaaaggatagatgcc-----cgatgatgccatagccatatttgcctttcctt 22855708  T
Q  319 agtaccggtattgtgacgcatatgattgggtcttccagaactgaaatcatccatataatataa 381  Q
    |||| | ||||||||||||||||||| || ||| ||||||||||||||||||| |||||||||    
T  22855707 agtatcagtattgtgacgcatatgatgggctctaccagaactgaaatcatccacataatataa 22855645  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 32223968 - 32224067
Alignment:
Q  394 tagtaccacgcccaatgatctccttggtgagaatatcctgaagaagacaaaaggaaggataaattagtgcaacacaatttaactcttcagtgacttgact 493  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||| ||  | ||||||||||||  ||||||||| || ||||  || ||||||||    
T  32223968 tagtaccacgcccaatgatctccttggtgagaatatcctgaagtaaacagaacaatggataaattagtaaaacacaattcaagtctttggttacttgact 32224067  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 391 - 436
Target Start/End: Complemental strand, 21261650 - 21261605
Alignment:
Q  391 tcttagtaccacgcccaatgatctccttggtgagaatatcctgaag 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  21261650 tcttagtaccacgcccaatgatctccttggtgagaatatcctgaag 21261605  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 155
Target Start/End: Original strand, 32223625 - 32223749
Alignment:
Q  31 ccaagtcattcgagtacaatcatcgacaaatatcacaaaccaacgaataccagaagcagtagcttttggggaaggcacccaaacatcagagtggaccaat 130  Q
    ||||||||||||||| |||||||| ||||||||||||||||| | |  || |||   || || ||||||||| ||  |||| |||||||| |||| |||     
T  32223625 ccaagtcattcgagtgcaatcatcaacaaatatcacaaaccaccaataactagatatagaagattttggggatggaccccatacatcagaatggatcaaa 32223724  T
Q  131 gaaaaaggaatattacttttattca 155  Q
    | |||||||| |||||| |||||||    
T  32223725 gcaaaaggaacattactcttattca 32223749  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 21262009 - 21261963
Alignment:
Q  31 ccaagtcattcgagtacaatcatcgacaaatatcacaaaccaacgaa 77  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||||    
T  21262009 ccaagtcattcgagtgcaatcatcaataaatatcacaaaccaacgaa 21261963  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 390 - 436
Target Start/End: Complemental strand, 6844772 - 6844726
Alignment:
Q  390 ctcttagtaccacgcccaatgatctccttggtgagaatatcctgaag 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  6844772 ctcttagtaccacgcccaatgatctccttggtgagaatatcctgaag 6844726  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 389 - 445
Target Start/End: Original strand, 5863789 - 5863845
Alignment:
Q  389 tctcttagtaccacgcccaatgatctccttggtgagaatatcctgaagaagacaaaa 445  Q
    |||||||||||||||||||||||||||||||||||| || ||||||| ||| |||||    
T  5863789 tctcttagtaccacgcccaatgatctccttggtgaggatgtcctgaaaaaggcaaaa 5863845  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 6845152 - 6845106
Alignment:
Q  31 ccaagtcattcgagtacaatcatcgacaaatatcacaaaccaacgaa 77  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||||    
T  6845152 ccaagtcattcgagtgcaatcatcaataaatatcacaaaccaacgaa 6845106  T

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Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 391 - 436
Target Start/End: Complemental strand, 47802222 - 47802177
Alignment:
Q  391 tcttagtaccacgcccaatgatctccttggtgagaatatcctgaag 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  47802222 tcttagtaccacgcccaatgatctccttggtgagaatatcctgaag 47802177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 389 - 484
Target Start/End: Original strand, 34170773 - 34170868
Alignment:
Q  389 tctcttagtaccacgcccaatgatctccttggtgagaatatcctgaagaagacaaaaggaaggataaattagtgcaacacaatttaactcttcagt 484  Q
    |||||||||||||||||||||||||||||||||||| || ||||||| ||| |||||    ||||| ||||| || |||||||| || ||||||||    
T  34170773 tctcttagtaccacgcccaatgatctccttggtgaggatgtcctgaaaaaggcaaaattttggatacattagagctacacaattcaaatcttcagt 34170868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 47802581 - 47802535
Alignment:
Q  31 ccaagtcattcgagtacaatcatcgacaaatatcacaaaccaacgaa 77  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||||    
T  47802581 ccaagtcattcgagtgcaatcatcaataaatatcacaaaccaacgaa 47802535  T

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Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 389 - 484
Target Start/End: Original strand, 15668356 - 15668451
Alignment:
Q  389 tctcttagtaccacgcccaatgatctccttggtgagaatatcctgaagaagacaaaaggaaggataaattagtgcaacacaatttaactcttcagt 484  Q
    |||||||||||||||||||||||||||||||||||| || ||||||| ||| |||||    ||||| ||||| || |||||||| || ||||||||    
T  15668356 tctcttagtaccacgcccaatgatctccttggtgaggatgtcctgaaaaaggcaaaattttggatacattagagctacacaattcaaatcttcagt 15668451  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 445
Target Start/End: Complemental strand, 41298713 - 41298657
Alignment:
Q  389 tctcttagtaccacgcccaatgatctccttggtgagaatatcctgaagaagacaaaa 445  Q
    ||||||||||||||||||||| |||| |||| |||| | ||||||||||||||||||    
T  41298713 tctcttagtaccacgcccaataatcttcttgctgagtacatcctgaagaagacaaaa 41298657  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 41302360 - 41302319
Alignment:
Q  35 gtcattcgagtacaatcatcgacaaatatcacaaaccaacga 76  Q
    ||||||||||| |||||||||| |||||| ||||||||||||    
T  41302360 gtcattcgagtgcaatcatcgataaatattacaaaccaacga 41302319  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 393 - 435
Target Start/End: Complemental strand, 10665764 - 10665722
Alignment:
Q  393 ttagtaccacgcccaatgatctccttggtgagaatatcctgaa 435  Q
    |||||| ||| ||||||||||||||| ||||||||||||||||    
T  10665764 ttagtatcactcccaatgatctcctttgtgagaatatcctgaa 10665722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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