View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13161_low_5 (Length: 465)
Name: NF13161_low_5
Description: NF13161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13161_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 16 - 448
Target Start/End: Original strand, 44719799 - 44720231
Alignment:
| Q |
16 |
atcggagcatattaggacaatgtaatgcaaagttgtagtgccaaaatcaattttatttagattaacttggcatttgacaacagtccattttcagcccaaa |
115 |
Q |
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| T |
44719799 |
atcggagcatattaagacaatgtaatgcaaagttgtagtgccaaaatcaattttatttagattaacttggcatttgacaacggtccattttcagcccaaa |
44719898 |
T |
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| Q |
116 |
acttcgtaggtagtctgcattagaagaaacgtgattacttaattataatcaactaatgttgcaaaagaaaataacaaatagaagatctggtgaagagttt |
215 |
Q |
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| T |
44719899 |
acttcgtaggtagtctgcattagaagaaaggtgattacttaattataatcaactaatgttgcaaaagaaaataacaaatagaagatctggtgaagagttt |
44719998 |
T |
|
| Q |
216 |
cattattcagcggtccatattcaattagctatttgtttaagatggccaagcctcttagcactcagaccaaccagatgtttggtttaatctgaagttattt |
315 |
Q |
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| T |
44719999 |
cattattcagcggtccatattcaatcagctatttgtttaagatggccaagcctcttagaactcagaccaaccagatgtttggtttaatctgaagttattt |
44720098 |
T |
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| Q |
316 |
gtattttttcgtatgaacatacattataaagttgatatctgaattttcatttaaagcattaaaagcagcaatgttacctgcagaaggctgacatggttaa |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44720099 |
gtattttttcgtatgaacatacattataaagttgatatctgaattttcatttaaagcattaaaagcagcaatgttacctacagaaggctgacatggttaa |
44720198 |
T |
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| Q |
416 |
gcgttcacatagtgagatgctttcccatgttgt |
448 |
Q |
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| T |
44720199 |
acgttcacatagtcagatgctttcccatgttgt |
44720231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 341 - 438
Target Start/End: Complemental strand, 43169874 - 43169769
Alignment:
| Q |
341 |
ataaagttgatatctgaattttcatttaaagcattaaaagcagcaatg--------ttacctgcagaaggctgacatggttaagcgttcacatagtgaga |
432 |
Q |
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| T |
43169874 |
ataaagttgataactaaattttcatttaaagcattaaaaacagcaatgcgttaattttacctgcagaaggctgacacggttaagcgttcacatagtgtga |
43169775 |
T |
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| Q |
433 |
tgcttt |
438 |
Q |
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|||||| |
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| T |
43169774 |
tgcttt |
43169769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 186
Target Start/End: Complemental strand, 43170607 - 43170511
Alignment:
| Q |
89 |
ttgacaacagtccattttcagcccaaaacttcgtaggtagtctgcattagaagaaacgtgattacttaattataatcaactaatgttgcaaaagaaaa |
186 |
Q |
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| T |
43170607 |
ttgacaacagtccatttctagcccaaaacttagttggccgtca-cattagaagaaaggtaattacttaattataatcaactaacgccgcaaaagaaaa |
43170511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 340
Target Start/End: Complemental strand, 43169990 - 43169890
Alignment:
| Q |
244 |
ctatttgtttaagatggccaagcctcttagcactcag----accaaccagatgtttggtttaatctgaagttatt-tgtattttttcgtatgaacataca |
338 |
Q |
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|||||||||||||||| |||||||||| ||||||||| |||||||| ||| ||||| |||||||||||||| ||||||||| |||||| ||||| |
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| T |
43169990 |
ctatttgtttaagatgaccaagcctctcagcactcagacataccaaccacatg-ttggtaaaatctgaagttattccttattttttcatatgaaaataca |
43169892 |
T |
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| Q |
339 |
tt |
340 |
Q |
| |
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|| |
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|
| T |
43169891 |
tt |
43169890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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