View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13161_low_6 (Length: 415)
Name: NF13161_low_6
Description: NF13161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13161_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 47467619 - 47467221
Alignment:
| Q |
1 |
tcttgcatggattcttcatcaaggagacgatgtagtgcccatccctggtaagtaactttccactttgtgacctcaacaagttaggcatctatggagctta |
100 |
Q |
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| T |
47467619 |
tcttgcatggattcttcatcaaggagacgatgtagtgcccatccctggtaagtaactttccactttgtgacctcaacaagttaggcatctatggagctta |
47467520 |
T |
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| Q |
101 |
ctcccgtgtataatttgaatgttcagggaaggatactaatcaatctgttatgacaaattcactacatgaaattatttgaaatttttgaaacctcaattat |
200 |
Q |
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| T |
47467519 |
ctcccgtgtataatttgaatgttcagggaaggatactaatcaatctgttatgacaaattcactacatgaaattatttgaaatttttgaaacctcaattat |
47467420 |
T |
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| Q |
201 |
gattccttttgttgttgcaaatatgactttgcaacctgtcatgtgttgtaggaacaactaagataaaaaatcttgaaagtaatatcagttcgtttaaagt |
300 |
Q |
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| T |
47467419 |
gattccttttgttgttgcaaatatgactttgcagactgtcatgtgttgtaggaacaactaagataaaaaatcttgaaagtaatatcagttcgtttaaagt |
47467320 |
T |
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| Q |
301 |
gaaactcaacaaaaatgatttgaaggagattgaagatgctgtgccaatatctgaggtgtcaggggatcggacaactggtgcttttgttcaatgttcttg |
399 |
Q |
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| T |
47467319 |
gaaactcaacaaaaatgatttgaaggagattgaagatgctgtgccaatatctgaggtgtcaggggatcggacaactggtgcttttgttcaatgttcttg |
47467221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 396
Target Start/End: Original strand, 47227346 - 47227402
Alignment:
| Q |
340 |
tgtgccaatatctgaggtgtcaggggatcggacaactggtgcttttgttcaatgttc |
396 |
Q |
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| T |
47227346 |
tgtgccaatatctgaggtgtcaggggatcggacaactgatggttttgttcattgttc |
47227402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 282
Target Start/End: Original strand, 47227254 - 47227340
Alignment:
| Q |
198 |
tatgattccttttgttgttgcaaatatgactttgc---aacctgtcatgtgttgtaggaacaactaagataaaaaatcttgaaagtaa |
282 |
Q |
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| T |
47227254 |
tatgattccttt-gttgttgcaagtatgacatttctataacctctcatgtgttgtatgaacaacgaagataaagaatcttgaaagtaa |
47227340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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