View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13161_low_8 (Length: 403)
Name: NF13161_low_8
Description: NF13161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13161_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 10 - 262
Target Start/End: Original strand, 17409390 - 17409639
Alignment:
| Q |
10 |
aagaatatccaactgtttgataataatttagatattattannnnnnnctgtacaaaggttgatgtggcttatttgattaattatggtttatttttatttt |
109 |
Q |
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| T |
17409390 |
aagaaaatccaactgtttgataataatttagatattattatttttttctgtacaaaggttgatgtggcttatttgattaattatggttttttttt----- |
17409484 |
T |
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| Q |
110 |
tataatgtatggaatatattgtgtcacactctaatgatgttgtattgtattacaaatttcatgttttaatactgaagtcaaaccta--nnnnnnnnnnnn |
207 |
Q |
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| T |
17409485 |
tataatgtatggaatatattgtgtcacactctaatgatgttgtattgtattacaaatttcatgttttaatactgaagtcaaacctatctccctctctctc |
17409584 |
T |
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| Q |
208 |
nnntctataatctgatttattttttggtcaaactcttaattaattttaatcctaa |
262 |
Q |
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| T |
17409585 |
tcttctataatctgatttattttttggtcaaactcttaattaatttaaatcctaa |
17409639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 261 - 386
Target Start/End: Original strand, 17409672 - 17409797
Alignment:
| Q |
261 |
aatgcacaataaatgttgacattgaagttggaaggaaacgaatttgtgaacctcatatattcccatgttgcatagcacatggacagatcctgatgtcata |
360 |
Q |
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| T |
17409672 |
aatgcacaataaatgttgacattgaagttggaaggaaacgaatttgtgaacctcatatattcccatgttgcacagcacatggacagatcctgatgtcata |
17409771 |
T |
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| Q |
361 |
agaaaataaatattagatgctttgat |
386 |
Q |
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| T |
17409772 |
agaaaataaatattagatgctttgat |
17409797 |
T |
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