View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13161_low_9 (Length: 354)
Name: NF13161_low_9
Description: NF13161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13161_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 332
Target Start/End: Complemental strand, 49816473 - 49816144
Alignment:
| Q |
10 |
ataattctggtagaaaaagataagttgacaggttaagggttaattttactgttaatactcatgctcaccaaaataatatttcctttttaa---------- |
99 |
Q |
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| T |
49816473 |
ataattctggtagaaaaagataagttgacaggttaagggttaattttactgttaatactcatgctcaccaaaataatatttcctttttaaatcacatttt |
49816374 |
T |
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| Q |
100 |
-----atcatgtatcacatttaatttgttacaatttttatccaaaatcacaacacagttatttgaggatgaaaaggttcgaattttnnnnnnngagacta |
194 |
Q |
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| T |
49816373 |
ttattatcatgtatcacatttaatttgttaaaaattttatccaaaatcacaacacagttatttgaggatcaaaaggttcaaatttt-aaaaaagagacta |
49816275 |
T |
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| Q |
195 |
attttgtgaacgtaattaaatagagagacaaaaagtgtgattcagcatagggttaaataataaatatcagtacatttttataaaattataatattgggca |
294 |
Q |
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| T |
49816274 |
attttgtgaacgaaattaaatagagagacaaaaagtgtcattcagcataaggt-------taaatatcagtacatttttataaaattataatattgggca |
49816182 |
T |
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| Q |
295 |
taaattgtaattttgataaatgaaaactacagctgaag |
332 |
Q |
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| T |
49816181 |
taaattgtaattttgataaatgaaaactacagctgaag |
49816144 |
T |
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