View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13162_high_1 (Length: 695)

Name: NF13162_high_1
Description: NF13162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13162_high_1
NF13162_high_1
[»] chr7 (1 HSPs)
chr7 (17-678)||(2302658-2303319)


Alignment Details
Target: chr7 (Bit Score: 621; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 17 - 678
Target Start/End: Original strand, 2302658 - 2303319
Alignment:
Q  17 tgaaggtaagataagctatttgcaattcctttcacaatctcaacccttttacaccaatccaattccactgcttcaacatcattgtgtagaacacaataca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2302658 tgaaggtaagataagctatttgcaattcctttcacaatctcaacccttttacaccaatccaattccactgcttcaacatcattgcgtagaacacaataca 2302757  T
Q  117 agcttcccttttccatatattccaaaaccaagaacatgcatctattgtgcaagcaaaaaccataaagtttcaaaatatttctatgccttatctttgtcaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2302758 agcttcccttttccatatattccaaaaccaagaacatgcatctattgtgcaagcaaaaaccataaagcttcaaaatatttctatgccttatctttgtcaa 2302857  T
Q  217 cattctcacctcattcttgaaaatctttctaatcaatggttcattagcttctaaattgtggagtttcttcaatgccactactctaccactaggtagattt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2302858 cattctcacctcattcttgaaaatctttctaatcaatggttcattagcttctaaattgtggagtttcttcaatgccactactctaccactaggtagattt 2302957  T
Q  317 gctttataaacactaccatagccaccaactcctatgcaatatttgatgtcaaaattctctgttgcttcaattatatcttcataagcaattttaccatcat 416  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2302958 gctttataaacactaccataaccaccaacgcctatgcaatatttgatgtcaaaattctctgttgcttcaattatatcttcataagcaattttaccatcat 2303057  T
Q  417 agttccatattgnnnnnnngtcaccattcttcgtagtttgtgttcttgaaatgaaactacaagccttacaccaacataggaacacatacaaagagcatag 516  Q
    ||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2303058 agttccatattgaaaaaaagtcaccattcttcgtagtttgtgttcttgaaatgaaactacaagccttacaccaacataggaacacatacaaagagcatag 2303157  T
Q  517 aagagcaagaaaagatatgagtggaatgaaaatcttcatatgagtcttgagtctagtgtttgttttggtaggagaggagtaacaagtagttgaatatcta 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2303158 aagagcaagaaaagatatgagtggaatgaaaatcttcatatgagtcttgagtctagtgtttgttttggtaggagaggagtaacaagtagttgaatatcta 2303257  T
Q  617 aattggttgcacaaaaactcatttccaataaacgcgttcggcgcgacagtatcttggagact 678  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2303258 aattggttgcacaaaaactcatttccaataaacgcgttcggcgcggcagtatcttggagact 2303319  T

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