View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13162_low_11 (Length: 288)

Name: NF13162_low_11
Description: NF13162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13162_low_11
NF13162_low_11
[»] chr6 (2 HSPs)
chr6 (1-137)||(32679640-32679776)
chr6 (64-111)||(32679630-32679676)
[»] chr3 (3 HSPs)
chr3 (103-182)||(2230576-2230655)
chr3 (206-274)||(2230704-2230772)
chr3 (1-100)||(2230511-2230609)
[»] chr8 (3 HSPs)
chr8 (184-274)||(44806913-44807003)
chr8 (3-47)||(44806751-44806795)
chr8 (102-169)||(44806806-44806873)
[»] chr2 (3 HSPs)
chr2 (10-75)||(28136025-28136090)
chr2 (184-274)||(28135839-28135930)
chr2 (102-182)||(28135955-28136035)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 32679776 - 32679640
Alignment:
Q  1 atgtagctaagctggtatgatgtgtttttcatgatatttgagataacaaacaagtattgttggttttcatcctttgtgggttgtacctgacttctaaacc 100  Q
    |||||||||||||| || |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32679776 atgtagctaagctgttaggatgtgttttacatgatatttaagataacaaacaagtattgttggttttcatcctttatgggttgtacctgacttctaaacc 32679677  T
Q  101 ttttcatcctttatggttgtacctgacttctaaacct 137  Q
    |||||||||||||||||||||||||||||||||||||    
T  32679676 ttttcatcctttatggttgtacctgacttctaaacct 32679640  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 32679676 - 32679630
Alignment:
Q  64 ttttcatcctttgtgggttgtacctgacttctaaaccttttcatcctt 111  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||    
T  32679676 ttttcatcctttatgg-ttgtacctgacttctaaaccttttcatcctt 32679630  T

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Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 2230576 - 2230655
Alignment:
Q  103 ttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatccacatattattattc 182  Q
    |||||||||| || ||||||||| |||||||||| |||||| ||||||||||||||||| ||||||| ||||||||||||    
T  2230576 ttcatcctttttgattgtacctggcttctaaaccaatcaccagaggccttaagtttttttatatccatatattattattc 2230655  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 274
Target Start/End: Original strand, 2230704 - 2230772
Alignment:
Q  206 ttttgttttgctccttaatcttaggtcttttattacttgggcgagctgaatgattcattatcctatgcc 274  Q
    |||| ||| ||||||| ||||||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  2230704 ttttttttcgctcctttatcttaggtctttaattacttgggcgagctgaatgactcactatcctatgcc 2230772  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 2230511 - 2230609
Alignment:
Q  1 atgtagctaagctggtatgatgtgtttttcatgatatttgagataacaaacaagtattgttggttttcatcctttgtgggttgtacctgacttctaaacc 100  Q
    |||| ||||||||| ||||||||||||| |||||||||||||||| |||| || |||| | ||  |||||||||| | | ||||||||| ||||||||||    
T  2230511 atgtggctaagctgttatgatgtgttttacatgatatttgagatagcaaataaatattttcggccttcatccttt-ttgattgtacctggcttctaaacc 2230609  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 184 - 274
Target Start/End: Original strand, 44806913 - 44807003
Alignment:
Q  184 tggtttgtgttttggcatctgattttgttttgctccttaatcttaggtcttttattacttgggcgagctgaatgattcattatcctatgcc 274  Q
    |||||||| |||| | ||||||||||  || ||||||| |||||||||||||||||||||||||||| ||||||| ||| |||||||||||    
T  44806913 tggtttgtattttagtatctgatttttcttcgctcctttatcttaggtcttttattacttgggcgagttgaatgactcactatcctatgcc 44807003  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 44806751 - 44806795
Alignment:
Q  3 gtagctaagctggtatgatgtgtttttcatgatatttgagataac 47  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||    
T  44806751 gtagctaagctgttatgatgtgttttacatgatatttgagataac 44806795  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 169
Target Start/End: Original strand, 44806806 - 44806873
Alignment:
Q  102 tttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatcca 169  Q
    |||||| |||| || ||||||| | |||||||||| |||||| |||| ||||||||||||||||||||    
T  44806806 tttcattctttttgattgtacccggcttctaaaccaatcaccagaggacttaagttttttcatatcca 44806873  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 28136090 - 28136025
Alignment:
Q  10 agctggtatgatgtgtttttcatgatatttgagataacaaacaagtattgttggttttcatccttt 75  Q
    ||||| ||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||    
T  28136090 agctgttatgatgtgttttacatgatatttgagataacaaataagtattgttggctttcatccttt 28136025  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 274
Target Start/End: Complemental strand, 28135930 - 28135839
Alignment:
Q  184 tggtttgtgttttggc-atctgattttgttttgctccttaatcttaggtcttttattacttgggcgagctgaatgattcattatcctatgcc 274  Q
    |||||||||||||  | |||| ||||| ||| ||||||| ||||||||| |||||||||||||| ||||||||||| ||| |||||||||||    
T  28135930 tggtttgtgtttttactatctaattttttttcgctcctttatcttaggtattttattacttgggtgagctgaatgactcactatcctatgcc 28135839  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 28136035 - 28135955
Alignment:
Q  102 tttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatccacatattattattc 182  Q
    ||||||||||| |  ||||||| | |||||||||| |||||| ||| ||||| ||||||||||||||  ||||||||||||    
T  28136035 tttcatccttttttattgtacccggcttctaaaccaatcaccagagtccttatgttttttcatatccctatattattattc 28135955  T

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