View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13162_low_12 (Length: 283)
Name: NF13162_low_12
Description: NF13162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13162_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 32680048 - 32680294
Alignment:
| Q |
19 |
aacaagccaaaaaagcacagagggctacaataaaaagtcttaatattttggtataaattcccttgattgagaagctttcaaaacctatgttgtcaatcgt |
118 |
Q |
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| T |
32680048 |
aacaagccaaaaaagcacagagggctacaataaaaagtcttaatattttggtataaattcccttgattgagaagctttcaaaacctatgttgtcaatcgt |
32680147 |
T |
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| Q |
119 |
ggatcgaggaaaactctgattgactcatttgtctcttattaaaaggatcagagggagtatctgacaatgtaaaccaaagcactacaaagacagacaaatt |
218 |
Q |
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| T |
32680148 |
ggatcgaggaaaactctgattgactcatttgtctcctattaaaaggattagagggagtatctgacaatgtaaaccaaagcactacaaagacagacaaatt |
32680247 |
T |
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| Q |
219 |
agttttcaattttcaccttgttcggtaataaggatttctcttcagct |
265 |
Q |
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| T |
32680248 |
agttttcaattttcaccttgttcagtaataaggatttctcttcagct |
32680294 |
T |
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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 176 - 258
Target Start/End: Original strand, 40116880 - 40116962
Alignment:
| Q |
176 |
tatctgacaatgtaaaccaaagcactacaaagacagacaaattagttttcaattttcaccttgttcggtaataaggatttctc |
258 |
Q |
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| T |
40116880 |
tatcagacaatgtaaaccaaagcactagaaagacgaacaaatcagttttcaattttcaccttgttcagtaataaggatttctc |
40116962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 44806454 - 44806374
Alignment:
| Q |
42 |
gctacaataaaaagtcttaatattttggtataaattcccttgattgagaagctttcaaaacctatgttgtcaatcgtggat |
122 |
Q |
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||||||| |||||||||||| ||| |||||||||||||| ||| |||||||||||||||||||||||||||| |||||| |
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| T |
44806454 |
gctacaaggaaaagtcttaatgatttcgtataaattcccttaattcagaagctttcaaaacctatgttgtcaatagtggat |
44806374 |
T |
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