View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13162_low_2 (Length: 677)
Name: NF13162_low_2
Description: NF13162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13162_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 598; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 3 - 662
Target Start/End: Complemental strand, 53123740 - 53123079
Alignment:
| Q |
3 |
tgggtagattattctcagcatagttttaggaacagtcactggactaattggttctgtaatctttcacattggtggttcgttgtgctgttcagtatctatt |
102 |
Q |
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| T |
53123740 |
tgggaagatcattctcagcatagttttaggaacagtcactggactaattggttctgtaatctttcacattggtggttcgttgtgctgttcagtatctatt |
53123641 |
T |
|
| Q |
103 |
cttcccaaaaattgcctcaaagacactgcaaacagctttaacaaacgaaaaccatttgcttggttcaaatccaacccggatactacaaaacaaaactatt |
202 |
Q |
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| T |
53123640 |
cttcccaaaaattgcctcaaagacactgcaaacagctttaacaaacgaaaaccatttgcttggttcgaatccaacccggatactacaaaacaaaactatt |
53123541 |
T |
|
| Q |
203 |
ctggaaaatggtctcaaaaggctaataccctttgggagcaattcaccagcgtataagagaaaaccaaaaccagtgaagaggcaaatacagatggaactaa |
302 |
Q |
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| T |
53123540 |
ctggaaaatggtctcaaaaggctaataccctttgggagcaattcaccagcgtataagagaaaaccaaaaccagtgaagaggcaaatacagatggaactga |
53123441 |
T |
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| Q |
303 |
acttcttggtattatgaaaggtcttcaatattttcatttcacttgtgtgcctcagattttgcacttatgtcaaaattttgtttcttttcctctttgtgct |
402 |
Q |
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| T |
53123440 |
acttcttggtattatgaaaggtcttcaatattttcatttcacttgtgtgcctcagattttgcacttatgtcaaaattttgtttcttttcctctttgtgct |
53123341 |
T |
|
| Q |
403 |
tttaaannnnnnncactctt--cacagttaccaagaattgcagtgtaagttctcagtctataattgcctttttcgagttttctattcatgcttcttatca |
500 |
Q |
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| T |
53123340 |
tttaaatttttttcactcttcacacagttaccaagaattgcagtgtaagttctcagtctataattgcctttttcgagttttctattcatgcttcttatca |
53123241 |
T |
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| Q |
501 |
atatgacgaaggaaatccaagtttttgcttgtaactttgttccagtccctctgaatattgttcaaatcatcaaaagcatgtatagattgatatacctatc |
600 |
Q |
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| T |
53123240 |
atatgacgaaggaaatccaagtttttgcttgtacctttgttccagtccctctgaatattgctcaaatcatcaaaagcatgtatagattgatatacctatc |
53123141 |
T |
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| Q |
601 |
ggttgtaggacacatctatcgaacttatgaattcttgtttagatgagttggatgatgtattt |
662 |
Q |
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| T |
53123140 |
ggttgtaggacacatctatcgagcttatgaattcttgtttggatgagttggatgatgtattt |
53123079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 317 - 365
Target Start/End: Complemental strand, 6504730 - 6504682
Alignment:
| Q |
317 |
tgaaaggtcttcaatattttcatttcacttgtgtgcctcagattttgca |
365 |
Q |
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| T |
6504730 |
tgaaaggtcttcaatatcttcattttacttgtgtgcctcagattttgca |
6504682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 6505112 - 6505046
Alignment:
| Q |
110 |
aaaattgcctcaaagacactgcaaacagctttaacaaacgaaaaccatttgcttggttcaaatccaa |
176 |
Q |
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| T |
6505112 |
aaaattgcctcaaagacactccaagtagctttgacaaaagaaaaccatatgcttggttcaagtccaa |
6505046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 6505246 - 6505155
Alignment:
| Q |
8 |
agattattctcagcatagttttaggaacagtcactggactaattggttctgtaatctttcacattggtggttcgttgtgctgttcagtatcta |
100 |
Q |
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|||||||| | ||||||||||||||| | || |||||| ||||||||||||| ||||| |||| ||| ||||||||| |||| ||||||| |
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| T |
6505246 |
agattattattagcatagttttaggagctgttactggattaattggttctgttctcttt-gcattcgtgattcgttgtgttgtttggtatcta |
6505155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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