View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13162_low_3 (Length: 650)
Name: NF13162_low_3
Description: NF13162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13162_low_3 |
 | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0114 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 1 - 633
Target Start/End: Complemental strand, 12621269 - 12620633
Alignment:
| Q |
1 |
tggtatgaggcaagtagatcctctgtcaccttacatatatcattctatgtgatgaaggtttatcagcattgatcataattgctgaaaaccaaggggaact |
100 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
12621269 |
tggtatgaggaaagtagatcctccgtcaccttacatatatcattctatgtgatgaaggcttatcagcattgatcataattgctaaaaaccaaggggaact |
12621170 |
T |
|
| Q |
101 |
acatggtgtgcgtatttatcgtaatgtcccggtggtgtctgacttattgtttgctgatgaatgtttcctattgttccaagtagaagaaagttaagctcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
12621169 |
acatggtgtgcgtatttatcgtaatgccccggtggtgtctgacttattgtttgctgatgaatgtttcctattgtttcaagtagaagaaagttaagctcat |
12621070 |
T |
|
| Q |
201 |
gtgatgaagaaaattttaacaaggtatgaggaagcatcaggtcaagccatcagcctttactaagtccgaaatattctatagtaggaatgtccaag----- |
295 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| | ||||||||||| |||| |||||||||||||||||||||||||||||| |||||| |
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|
| T |
12621069 |
gtgatgaagaaaattttaacaatttatgaggaagcatcggatcaagccatcaacctt-actaagtccgaaatattctatagtaggaatatccaagattcg |
12620971 |
T |
|
| Q |
296 |
ttgcatcaatcaattaccaatatcttaggagcgtgtgatctacttggaaccggaaaataccttggtttaccaccgatgatagggagaagtaagaaggcaa |
395 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12620970 |
ttgcatcaatcaattaccaacatcttaggagcatgtgatctacttggaaccggaaaataccttggtttaccaccgatgatagggagaagtaagaaggcaa |
12620871 |
T |
|
| Q |
396 |
tactcagctttatcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagcagaaagggaagtaatgattaaagttgttct |
495 |
Q |
| |
|
|| |||||||||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12620870 |
tattcagctttatcaaagacaagctgtggtagaaaataaacagctggagtagtaaatgtctgtcaaaagcagaaagggaagtaatgattaaagttgttct |
12620771 |
T |
|
| Q |
496 |
gcaatcaatcccttcgtatgtgatgagcatcttaagattacctaacactctcttagattagcttgagaagatggatgaatgcgttctagtgaggaaatgg |
595 |
Q |
| |
|
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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|
| T |
12620770 |
gcagtcaatcccttcgtatgtgatgaccatcttaagattacctaacactctcttagattagattgagaagatggatgaatgtgttctagtgaggaaatgg |
12620671 |
T |
|
| Q |
596 |
gggaacaagaaaaagaggcttgcattgcttgtcatggg |
633 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
12620670 |
gggaacaagaaaaagaggcttgcattgcttgtcatggg |
12620633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 9e-41; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 6 - 295
Target Start/End: Complemental strand, 7092466 - 7092179
Alignment:
| Q |
6 |
tgaggcaagtagatcctctgtcaccttacatatatcattctatgtgatgaaggtttatcagcattgatcataattgctgaaaaccaaggggaactacatg |
105 |
Q |
| |
|
||||||||| ||| ||||| ||||||||| ||| ||||| | |||| |||||| |||||| ||||||| | | || |||||| ||||||||| || | |
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|
| T |
7092466 |
tgaggcaaggagaccctctatcaccttacttat-tcattttgtgtgttgaaggcttatcaacattgattaaatatgttgaaaatataggggaacttcaag |
7092368 |
T |
|
| Q |
106 |
gtgtgcgtatttatcgtaatgtcccggtggtgtctgacttattgtttgctgatgaatgtttcctattgttccaagtagaagaaagttaagctcatgtgat |
205 |
Q |
| |
|
|||| ||||||| ||||| |||||||||||||||| | |||||||||| ||||| ||||| | || ||| ||| ||| ||||| ||||||||||||| |
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|
| T |
7092367 |
gtgtacgtatttgtcgtagtgtcccggtggtgtctcatttattgtttgttgatggtcgtttcatgttcttctaagcagaggaaagccaagctcatgtgat |
7092268 |
T |
|
| Q |
206 |
gaagaaaattttaacaaggtatgaggaagcatcaggtcaagccatcagcctttactaagtccgaaatattctatagtaggaatgtccaag |
295 |
Q |
| |
|
||| ||||||| ||||||||||||| ||| |||||||| ||||||| || ||| |||||||||||||||||||||||||||||||| |
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|
| T |
7092267 |
gaatcggattttaaaaaggtatgaggaaccattgggtcaagctatcagcc-ttcctatgtccgaaatattctatagtaggaatgtccaag |
7092179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 257
Target Start/End: Complemental strand, 15925527 - 15925412
Alignment:
| Q |
142 |
acttattgtttgctgatgaatgtttcctattgttccaagtagaagaaagttaagctcatgtgatgaagaaaattttaacaaggtatgaggaagcatcagg |
241 |
Q |
| |
|
|||||||||||||||| || ||||| | || ||||||| ||| || ||| ||||| |||| |||||| | ||||| ||||||||||| |||||||| || |
|
|
| T |
15925527 |
acttattgtttgctgacgactgttttttgttcttccaagcagaggatagtcaagcttatgttatgaagcagattttgacaaggtatgaagaagcatcggg |
15925428 |
T |
|
| Q |
242 |
tcaagccatcagcctt |
257 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
15925427 |
tcaagccatcaacctt |
15925412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 513
Target Start/End: Original strand, 21697127 - 21697259
Alignment:
| Q |
381 |
gaagtaagaaggcaatactcagctttatcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagcagaaagggaagtaat |
480 |
Q |
| |
|
||||||||||||||| ||||||| ||||| || || || ||| |||| || || || |||||||||||||| |||| ||||||| ||||||||| || |
|
|
| T |
21697127 |
gaagtaagaaggcaaccttcagcttcatcaaggatagagtttggcagaagattagtagctggagtagtaaatgcttgtccaaagcaggaagggaagtcat |
21697226 |
T |
|
| Q |
481 |
gattaaagttgttctgcaatcaatcccttcgta |
513 |
Q |
| |
|
||| ||| ||||| ||||| || |||||||| |
|
|
| T |
21697227 |
gatcaaatcagttcttcaatctattccttcgta |
21697259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 407 - 568
Target Start/End: Complemental strand, 21086721 - 21086560
Alignment:
| Q |
407 |
atcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagcagaaagggaagtaatgattaaagttgttctgcaatcaatcc |
506 |
Q |
| |
|
|||||||| || ||||||||||| || || |||||||| ||||||||| |||| ||||||| ||||||||| ||||| ||| ||||| ||||| || | |
|
|
| T |
21086721 |
atcaaagatagagtgtggtagaagattagtagttggagcagtaaatgtttgtctaaagcaggaagggaagtcatgataaaatcggttcttcaatctattc |
21086622 |
T |
|
| Q |
507 |
cttcgtatgtgatgagcatcttaagattacctaacactctcttagattagcttgagaagatg |
568 |
Q |
| |
|
| || ||||| ||||| ||||| |||||||| |||||| | |||||| | ||||||||||| |
|
|
| T |
21086621 |
catcctatgttatgagtatcttcagattaccaaacactttgttagatgaaattgagaagatg |
21086560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 399 - 467
Target Start/End: Complemental strand, 34073092 - 34073024
Alignment:
| Q |
399 |
tcagctttatcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagcag |
467 |
Q |
| |
|
|||| |||||||| ||||| |||||| | ||||| ||||||||||||||||||||| |||| ||||||| |
|
|
| T |
34073092 |
tcagttttatcaaggacagagtgtggcaaaaaattagcagttggagtagtaaatgtttgtccaaagcag |
34073024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 20469330 - 20469362
Alignment:
| Q |
224 |
gtatgaggaagcatcaggtcaagccatcagcct |
256 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
20469330 |
gtatgaggaagcatcaggtcaagcaatcagcct |
20469362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 404 - 522
Target Start/End: Original strand, 8723036 - 8723154
Alignment:
| Q |
404 |
tttatcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagcagaaagggaagtaatgattaaagttgttctgcaatcaa |
503 |
Q |
| |
|
||||||||||| | |||||| ||||||||||||| |||||||||||||| | || ||||||| |||| |||| ||||||||| ||| || ||| | | |
|
|
| T |
8723036 |
tttatcaaagatcgagtgtggcagaaaataagcagctggagtagtaaatgcttatccaaagcaggaaggaaagttatgattaaatctgtcctccaagcta |
8723135 |
T |
|
| Q |
504 |
tcccttcgtatgtgatgag |
522 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
8723136 |
tcccttcgtatgttatgag |
8723154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 27953148 - 27953095
Alignment:
| Q |
200 |
tgtgatgaagaaaattttaacaaggtatgaggaagcatcaggtcaagccatcag |
253 |
Q |
| |
|
|||||||||| | ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27953148 |
tgtgatgaagcagattttaacacagtatgaggaagcatcaggtcaagccatcag |
27953095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 467
Target Start/End: Original strand, 42763612 - 42763680
Alignment:
| Q |
399 |
tcagctttatcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagcag |
467 |
Q |
| |
|
|||||||||||||||| ||||| ||| | ||||| || || ||||| ||||||||||| || ||||||| |
|
|
| T |
42763612 |
tcagctttatcaaagatagggtttggcaaaaaatcagtagctggagcagtaaatgtctatccaaagcag |
42763680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 487
Target Start/End: Original strand, 15788369 - 15788452
Alignment:
| Q |
404 |
tttatcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagcagaaagggaagtaatgattaaa |
487 |
Q |
| |
|
||||||||||| | |||||| ||||||||||||| |||||||||||||| | || ||||||| ||||||||| ||||||||| |
|
|
| T |
15788369 |
tttatcaaagatcgagtgtggcagaaaataagcagctggagtagtaaatgcttatccaaagcaggaagggaagttatgattaaa |
15788452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 467
Target Start/End: Complemental strand, 236418 - 236379
Alignment:
| Q |
428 |
aaaataagcagttggagtagtaaatgtctgtcaaaagcag |
467 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
236418 |
aaaattagcagttggagtagtaaatgtctgtccaaagcag |
236379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0114 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0114
Description:
Target: scaffold0114; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 552
Target Start/End: Complemental strand, 13268 - 13115
Alignment:
| Q |
399 |
tcagctttatcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagcagaaagggaagtaatgattaaagttgttctgca |
498 |
Q |
| |
|
||||||||||||| || || |||||| | | ||| || |||||||| || |||||| |||| ||||| | ||||| || ||||| ||| |||||| || |
|
|
| T |
13268 |
tcagctttatcaaggatagagtgtggcaaagaattagtagttggagcagcaaatgtttgtctaaagctgggagggaggttatgatcaaatctgttcttca |
13169 |
T |
|
| Q |
499 |
atcaatcccttcgtatgtgatgagcatcttaagattacctaacactctcttaga |
552 |
Q |
| |
|
| | || || || ||||| ||||||||||| |||||||| |||| ||| ||||| |
|
|
| T |
13168 |
agctattccatcttatgtcatgagcatctttagattaccaaacattctattaga |
13115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 465
Target Start/End: Original strand, 39530609 - 39530670
Alignment:
| Q |
404 |
tttatcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagc |
465 |
Q |
| |
|
||||| ||||| || |||||| ||||||||| |||||||||||||| |||||||| ||||| |
|
|
| T |
39530609 |
tttattaaagatagagtgtggcagaaaataaatagttggagtagtaagtgtctgtctaaagc |
39530670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 467
Target Start/End: Complemental strand, 25596532 - 25596491
Alignment:
| Q |
426 |
agaaaataagcagttggagtagtaaatgtctgtcaaaagcag |
467 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||||||||||| |
|
|
| T |
25596532 |
agaaaattagtagttggagtagcaaatgtctgtcaaaagcag |
25596491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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