View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13162_low_4 (Length: 540)
Name: NF13162_low_4
Description: NF13162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13162_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Complemental strand, 8758191 - 8757669
Alignment:
| Q |
1 |
tgtatacatactcagaagaatggtggaacagataagaattatgagtggctgaaaaaccttaacatttacaatgatgatggcaatgtactactcttcctac |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8758191 |
tgtatacatactcagaagaatggtggaatagataagaattatgaatggctgaaaaaccttaacatttacaatgatgatggcaatgtactattcttcctac |
8758092 |
T |
|
| Q |
101 |
tgatgcaatttatgatggaatcctcttgaacctctagactgataaagctccaacctactcttggcttcttgcaacaattcttcaagggtttcatcatgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8758091 |
tgatgcaatttatgatggaatcctcttgaacctctagactgataaagctccaacctactcttggcttcttgcaacaattcttcaagggtttcatcatgtt |
8757992 |
T |
|
| Q |
201 |
gcatgaaagattgcttggatgcccattcaagcactcctagcacctcagccagagcaagttcctcgctatccggcacgtgcaatgcaatgtaagagagcag |
300 |
Q |
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| T |
8757991 |
gcatgaaagattgcttggatgcccattcaagcactcctagcacctcagccagagcaagttcctcgctatccggcacatgcaatgcaatgtaagagagcag |
8757892 |
T |
|
| Q |
301 |
aaccaatgctggaatctgaaccatttgttctccaaaatatacaagctgaatcaagtgttttgccccacctgcactgataattgccttggagtgatcaaca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8757891 |
aaccaatgctggaatctgaaccatttgttctccaaaatatacaagctgaatcaagtgttttgccccacctgcactgataattgcgttggagtgatcaaca |
8757792 |
T |
|
| Q |
401 |
tgaaggtagttttcactaccagcgaatttcctaagcgcgattgacgcctcccttgaaacctctgcctctctttcatcaagaagttttaccaatggaccga |
500 |
Q |
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| T |
8757791 |
tgaaggtagttttcactgccggcgaatttcctaagcgcgattgacgcctcccttgaaacctctgcctctctttcatcaagaagttttaccaatggaccga |
8757692 |
T |
|
| Q |
501 |
tcatccttgtctcggtagccttg |
523 |
Q |
| |
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| T |
8757691 |
tcatccttgtctcggtagccttg |
8757669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 89 - 311
Target Start/End: Original strand, 32030362 - 32030581
Alignment:
| Q |
89 |
tactcttcctactgatgcaatttatgatggaatcctcttgaacctctagactgataaagctccaacctactcttggcttcttgcaacaattcttcaaggg |
188 |
Q |
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||||||||||| ||||| ||||| || |||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||| | |||| | |
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| T |
32030362 |
tactcttcctattgatgtaatttttg---gaatcctcttgaacctctagactggtaaagctccagcctactcttggactcttgcaacaatgcctcaatag |
32030458 |
T |
|
| Q |
189 |
tttcatcatgttgcatgaaagattgcttggatgcccattcaagcactcctagcacctcagccagagcaagttcctcgctatccggcacgtgcaatgcaat |
288 |
Q |
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||||||||| |||| || |||||| || ||||||||||| ||||| || | |||||| || ||||| ||||| || ||||||||||| ||||| |
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| T |
32030459 |
cttcatcatgagccatgttaggttgcttagacgcccattcaagaactcccagaatctcagcttttgctagttcttcgctgtctggcacgtgcaacgcaat |
32030558 |
T |
|
| Q |
289 |
gtaagagagcagaaccaatgctg |
311 |
Q |
| |
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|| || ||||||||||| |||| |
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| T |
32030559 |
ataggatagcagaaccaaggctg |
32030581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 28035158 - 28035212
Alignment:
| Q |
115 |
atggaatcctcttgaacctctagactgataaagctccaacctactcttggcttct |
169 |
Q |
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|||||||||||| | |||||| || |||||||| ||||||||||| ||||||||| |
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| T |
28035158 |
atggaatcctctggtacctcttgattgataaagttccaacctacttttggcttct |
28035212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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