View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13162_low_5 (Length: 494)
Name: NF13162_low_5
Description: NF13162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13162_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 170 - 350
Target Start/End: Complemental strand, 6163569 - 6163389
Alignment:
| Q |
170 |
tcaatatgaacttggagaagaagctgatttgtgatagagaaatttgtataggctattaaacttaaaactaacgaaaaagtatataaaagtgacacattat |
269 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6163569 |
tcaatatgaacttgcagaagaagctgatttgtgatagagaaatttgtataggctattaaacttaaaactaacggaaaagtatataaaagtgacacattat |
6163470 |
T |
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| Q |
270 |
tacaattcatgatagaactcataagtgacattagtctatcttttttacaagtgacacattatcacaattcttgatggaact |
350 |
Q |
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| T |
6163469 |
tacaattcatgatagaactcataagtgacattagtctatcttttttacaagtgacacattatcacaattcttaatggaact |
6163389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 411 - 477
Target Start/End: Complemental strand, 6163328 - 6163261
Alignment:
| Q |
411 |
tgttatgtctagtagtaccttaaggctt-atatagccaattagactaacgattgtcttaacgagtttc |
477 |
Q |
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| T |
6163328 |
tgttatgtctagtagtaccttaaggctttatatagccaattagactaacggttgttttaacgagtttc |
6163261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 165 - 351
Target Start/End: Original strand, 28158708 - 28158896
Alignment:
| Q |
165 |
agaattcaatatgaacttggagaagaagctgatttgtgatagagaaatttgtataggctattaaacttaaaactaacgaaaaagtatataaa--agtgac |
262 |
Q |
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| T |
28158708 |
agaattcaatatgaacttgcagaagaagctgatttgtgatagagaaatttgtataggctattaaacttaaaattaacggaaaagtatataaattagtgac |
28158807 |
T |
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| Q |
263 |
acattattacaattcatgatagaactcataagtgacattagtctatcttttttacaagtgacacattatcacaattcttgatggaactc |
351 |
Q |
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| T |
28158808 |
acattattacaattcatgatagaactcataagtgacattagtctatctttttttcaagtgacacattatcacaattcttgatggaactc |
28158896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 411 - 476
Target Start/End: Original strand, 28158956 - 28159021
Alignment:
| Q |
411 |
tgttatgtctagtagtaccttaaggcttatatagccaattagactaacgattgtcttaacgagttt |
476 |
Q |
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| T |
28158956 |
tgttatgtctagtagtaccttaaggcttatatagccaattagactaacggttgtcttaacgagttt |
28159021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 167 - 351
Target Start/End: Complemental strand, 14359609 - 14359425
Alignment:
| Q |
167 |
aattcaatatgaacttggagaagaagctgatttgtgatagagaaatttgtataggctattaaacttaaaactaacgaaaaagtatataaaagtgacacat |
266 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| || |
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| T |
14359609 |
aattcaatatgaacttgcagaagaagctcatttgtgatagagaaatttgtataggctattaaacttgaaactaacggaaaagtatataaaagtgacaaat |
14359510 |
T |
|
| Q |
267 |
tattacaattcatgatagaactcataagtgacattagtctatcttttttacaagtgacacattatcacaattcttgatggaactc |
351 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14359509 |
tattacaattcaggatagaactcataagtgacattagtctctcttttttacaagtgacacattatcacaattcttgatggaactc |
14359425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 411 - 452
Target Start/End: Complemental strand, 14359370 - 14359329
Alignment:
| Q |
411 |
tgttatgtctagtagtaccttaaggcttatatagccaattag |
452 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
14359370 |
tgttatgtctagtagtaccttaaggcttatatagccaattag |
14359329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 51 - 159
Target Start/End: Original strand, 55692095 - 55692203
Alignment:
| Q |
51 |
gtgatatgaaagatgtattttgtccatgaaacaatgtgaagagaagaagtgaggtggcacattgtagggatggaagtggccctactagcacgattgcaag |
150 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
55692095 |
gtgatatgaaagatgtattttgtccatgaaacaatgagaagagaagaagtgaggtggcacattgtagggatggaagtgtccctactagcacgattgcaag |
55692194 |
T |
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| Q |
151 |
acgtggaaa |
159 |
Q |
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||||||||| |
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| T |
55692195 |
acgtggaaa |
55692203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 248 - 351
Target Start/End: Complemental strand, 4840069 - 4839966
Alignment:
| Q |
248 |
gtatataaaagtgacacattattacaattcatgatagaactcataagtgacattagtctatcttttttacaagtgacacattatcacaattcttgatgga |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4840069 |
gtatataaaagtgacacattattacaattcatgatagaactcataagtgacattagtctatctttttttcaagtgacacattatcacaattcttgatgga |
4839970 |
T |
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| Q |
348 |
actc |
351 |
Q |
| |
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|||| |
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|
| T |
4839969 |
actc |
4839966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 411 - 477
Target Start/End: Complemental strand, 4839906 - 4839840
Alignment:
| Q |
411 |
tgttatgtctagtagtaccttaaggcttatatagccaattagactaacgattgtcttaacgagtttc |
477 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4839906 |
tgttatgtctaatagtaccttaaggcttatatagccaattagactaacggttgtcttaacgagtttc |
4839840 |
T |
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