View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13162_low_6 (Length: 387)
Name: NF13162_low_6
Description: NF13162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13162_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 15 - 373
Target Start/End: Complemental strand, 52036167 - 52035813
Alignment:
| Q |
15 |
gaacctgtgtatagtgaatttgtgcaacaccaatagagattcttattaaatggaataaatgcaattgctcgttgttgtgaacttaattagcattcgcaat |
114 |
Q |
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| T |
52036167 |
gaacctgtgtatagtgaatttgtgcaacaccaatagagattcttattaaatggaataaatgcaattggtcgttgttgtgaacttaattagcattcgcaat |
52036068 |
T |
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| Q |
115 |
tattgtttacttgctgtatagaatctcaaacagactaacaacagtagttgccttgcctaatgttgaggcatcccctgttcccacagaaaacggttaaata |
214 |
Q |
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| T |
52036067 |
tattgtttacttgttgtatagaatctcaaacagactaacaacagtagttgccttgccttatgttgaggcatcccctgttcccacagaaaacggtta---a |
52035971 |
T |
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| Q |
215 |
atggttaatgtaatctattgagtggtttatcaattccatcctcttacatttttcattcattcttttcatcaattatccaaacaacttgcaagaacaccta |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52035970 |
atggttaatgtaatctattgagtggtttatcaattccatcctcttacatttttcattcattcttttcatcaattatccaaacaacttgcaagaacacgta |
52035871 |
T |
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| Q |
315 |
tnnnnnnntgtcaattacttcgaattattttgttgacaaatactaatattgtagaagct |
373 |
Q |
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| T |
52035870 |
t-aaaaaatatcaattacttcgaattattttgtttacaaatactaatattgtagaagct |
52035813 |
T |
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