View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13163_high_6 (Length: 320)
Name: NF13163_high_6
Description: NF13163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13163_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 14 - 307
Target Start/End: Original strand, 39110320 - 39110613
Alignment:
| Q |
14 |
agaagaagaactggaggagtttcttgatactgtcacggttgtcgggggaccgcggtccagaagtgaactttggacaatgtttagttctgcacatcaaatg |
113 |
Q |
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| T |
39110320 |
agaagaagaactggaggagtttcttgatactgtctcggttgtcgggggaccacggtccagaagtgaactttggacaatgtttagttctgcacatcaaatg |
39110419 |
T |
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| Q |
114 |
ggaagttgtagaatgggtaagaatgaagaagagggtgcagttgatgagaatggagaaagttgggaagcaaaagggttgtatgtgtgtgatggaagtgttt |
213 |
Q |
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| T |
39110420 |
ggaagttgtagaatgggtaagaatgaagaagagggtgcagttgatgagaatggagaaagttgggaagcaaaagggttgtatgtgtgtgatggaagtgttt |
39110519 |
T |
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| Q |
214 |
tgcctagtgcagttggtgttaaccctatggtaaccattcaatctacagcatactgtattgctagtaaaattgcagaatcacttaaggaagaata |
307 |
Q |
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| T |
39110520 |
tgcctagtgcagttggtgttaaccctatggtaaccattcaatctacagcatactgtattgctagtaaaattgcagaatcacttaaggaagaata |
39110613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 256
Target Start/End: Original strand, 31321749 - 31321907
Alignment:
| Q |
98 |
ttctgcacatcaaatgggaagttgtagaatgggtaagaatgaagaagagggtgcagttgatgagaatggagaaagttgggaagcaaaagggttgtatgtg |
197 |
Q |
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| T |
31321749 |
ttctgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagctgaagggttgtttgtt |
31321848 |
T |
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| Q |
198 |
tgtgatggaagtgttttgcctagtgcagttggtgttaaccctatggtaaccattcaatc |
256 |
Q |
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| T |
31321849 |
tgtgatgctagtgttcttccaactgctgttggtgttaatcctatgatcactattcaatc |
31321907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 256
Target Start/End: Original strand, 31334002 - 31334160
Alignment:
| Q |
98 |
ttctgcacatcaaatgggaagttgtagaatgggtaagaatgaagaagagggtgcagttgatgagaatggagaaagttgggaagcaaaagggttgtatgtg |
197 |
Q |
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| T |
31334002 |
ttctgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagctgaagggttgtttgtt |
31334101 |
T |
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| Q |
198 |
tgtgatggaagtgttttgcctagtgcagttggtgttaaccctatggtaaccattcaatc |
256 |
Q |
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| T |
31334102 |
tgtgatgctagtgttcttccaactgctgttggtgttaatcctatgatcactattcaatc |
31334160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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