View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13163_high_7 (Length: 281)
Name: NF13163_high_7
Description: NF13163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13163_high_7 |
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| [»] chr4 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 11 - 281
Target Start/End: Complemental strand, 52251044 - 52250774
Alignment:
| Q |
11 |
cagagagctatgacagggaatttgaaagattcttgggttgttggaaatcctgggttcccattgatggatggaattttggttccttatacacatcagaatc |
110 |
Q |
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| T |
52251044 |
cagagagctatgacagggaatttgaaagattcttgggttgttggaaattctgggttccctttgatggatggaattttggttccttatacacatcagaatc |
52250945 |
T |
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| Q |
111 |
ttacttggacacagcacgcgtttaatgagaaagtggaagatattcagaagctgagtaaggatgcgtttgcaaaggtgaaaggaaggtggtcttgtttgca |
210 |
Q |
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| T |
52250944 |
ttacttggacacagcacgcgtttaatgagaaagtggaagatattcagaagctgagtaaggatgcgtttgcaaaggtgaaaggaaggtggtcttgtttgca |
52250845 |
T |
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| Q |
211 |
gaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatattt |
281 |
Q |
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| T |
52250844 |
gaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatattt |
52250774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 30 - 281
Target Start/End: Complemental strand, 52262667 - 52262416
Alignment:
| Q |
30 |
atttgaaagattcttgggttgttggaaatcctgggttcccattgatggatggaattttggttccttatacacatcagaatcttacttggacacagcacgc |
129 |
Q |
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| T |
52262667 |
atttgaaagatgcttgggttgctggaaattctgggtaccctttaatggatgaaattttggttccttatgcacataagaatcttacttggacgcagcacgc |
52262568 |
T |
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| Q |
130 |
gtttaatgagaaagtggaagatattcagaagctgagtaaggatgcgtttgcaaaggtgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaag |
229 |
Q |
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| T |
52262567 |
gtttaatgagaaggttgaggatattcagaggattgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcaaaagaggacagaggtgaaa |
52262468 |
T |
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| Q |
230 |
attgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatattt |
281 |
Q |
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| T |
52262467 |
attgaggatttgcctaagattttaggtgcttgttgtgttttgcataatattt |
52262416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 281
Target Start/End: Original strand, 3698867 - 3698962
Alignment:
| Q |
186 |
tgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatattt |
281 |
Q |
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| T |
3698867 |
tgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagctacaagatttgcctgttgtacttggtgcttgttgtgttttgcataacattt |
3698962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 281
Target Start/End: Original strand, 3702555 - 3702650
Alignment:
| Q |
186 |
tgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatattt |
281 |
Q |
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| T |
3702555 |
tgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacattt |
3702650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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