View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13163_low_2 (Length: 766)
Name: NF13163_low_2
Description: NF13163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13163_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 10 - 554
Target Start/End: Original strand, 6732671 - 6733232
Alignment:
| Q |
10 |
attatactataagataaacagtatagagacatggataaacatatataagtcacatactatgatgttagaaaagaacacaatgatcgttttttctagtctt |
109 |
Q |
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| T |
6732671 |
attatactataagataaacagtatagagacatggataaacatatataagtcacgtactatgatgttagaaaagaacacaatgatcgttttttctagtctt |
6732770 |
T |
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| Q |
110 |
tgaactgtgttgtgtcaaat--------------------acatctagcaaatcatcactcatttaggcgcattagcataataat----gaacctgttgt |
185 |
Q |
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| T |
6732771 |
tgaactgtgttgtgtcatatggaattgatcatcattttgtacatctagcaaatcatcactcatttaggcgcattagcataataattaatgaacctgttgt |
6732870 |
T |
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| Q |
186 |
tgacacttttacacnnnnnnnacacttgcaaaattaactattttgac---aattaaggataatgtaccacaccttattcaaagcaaaataaaagataatg |
282 |
Q |
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| T |
6732871 |
tgacacttttacactttttttacacttgcaaaattaactattttgaccttaattaaggataatgtaccacaccttattcaaagcaaaataaaagataatg |
6732970 |
T |
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| Q |
283 |
taccgacctaatatgtttatgtttatgagtcaataaaatttgc-tgaaaggagtgtaagaacgacgatgtttcatgggataaagtgttggattgaaaaga |
381 |
Q |
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| T |
6732971 |
taccgacctaatatgtttatgtttatgagtcaataaaatttgcttgaaaggagtgtaagaacgacaatgtttcatgggataaagtgttggactgaaaaga |
6733070 |
T |
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| Q |
382 |
ccggtacaaacaaacataaagtaaatatagcaaagatgagaatgttgtatttgatgtgtgataattgataagtctagttttgaagactagacttgtgttg |
481 |
Q |
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| T |
6733071 |
ccggt----acaaacataaagtaaatatagtaaagatgagaatattgtatttgatgt-------atgataagtctagttttgaagactagacttatgttg |
6733159 |
T |
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| Q |
482 |
tatagcatgtagaaaggagaattgtggatttttaaattggattctctcgtttcaaccactctctactttcata |
554 |
Q |
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| T |
6733160 |
tataacatgtagaaaggagatttgtggatttttaaattggatcctctcgtttcaaccactctctacttccata |
6733232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 706 - 748
Target Start/End: Original strand, 6733387 - 6733429
Alignment:
| Q |
706 |
tccgcattcgcggattttgtactatgatgtttgtgagtagatc |
748 |
Q |
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| T |
6733387 |
tccgcatccgcagattttgtactatgatgtttgtgagtagatc |
6733429 |
T |
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