View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13163_low_3 (Length: 548)
Name: NF13163_low_3
Description: NF13163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13163_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 11 - 522
Target Start/End: Complemental strand, 28930855 - 28930344
Alignment:
| Q |
11 |
cacagatgtaccacgagaacataactagtgtgagaataagctgagatcataaaagaatttctacactaaaacttgagaattttacttgttcagttttaag |
110 |
Q |
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| T |
28930855 |
cacaaatgtaccacgagaacataactagtgtgagaataagctgagatcataaaagaatttctacactaaaacttgagaattttactggttcagttttaag |
28930756 |
T |
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| Q |
111 |
ttagatattttggttctatctatttagtattaccaaattgtctagaataactgctaactagtaaaatatagttgatgttttacagagcaatttgctgaat |
210 |
Q |
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| T |
28930755 |
ttagatattttggttctatctatttagtattaccaaattgtctagaataactgctaactagtaaaatatagttgatgttttacagagcaatttgctgaat |
28930656 |
T |
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| Q |
211 |
tgctgcttagcaaattgtctagaatgaaccaagagttgtcattttttctaatcggctaaagttttattgaataaaccccgctccgatcacaagaagtaac |
310 |
Q |
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| T |
28930655 |
tgctgcttagcaaattgtctagaatgaaccaagagttgtccttttttctaatcggctaaagttttattgaataaaccccgctccgatcacaagaagtaac |
28930556 |
T |
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| Q |
311 |
cggaggtaggctaaaagatacattagaaactcggcacagcaggttaaaagagaaatagcagacaaacaccctagatactaaagccaagctagtaactaca |
410 |
Q |
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| T |
28930555 |
cggaggtaggctaaaagctacattagaaactcggcacagcaggttaaaagagaaatagcagacaaacaccctagatactaaagccaagctagtaactaca |
28930456 |
T |
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| Q |
411 |
ccaaaaaggaccacaaaatcaaactaccaaactctacatcagccaaacctaccaaatacttaaactacaccacaacagataaagccctctcccctgtaac |
510 |
Q |
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| T |
28930455 |
ccaaaaaggaccacaaaatcaaactaccaaactctacatcagccaaacctaccaattacttaaactacaccacaacagataaagccctctcccctgtaac |
28930356 |
T |
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| Q |
511 |
taatctgttctt |
522 |
Q |
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| T |
28930355 |
taatctgttctt |
28930344 |
T |
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Back To:
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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 35123424 - 35123469
Alignment:
| Q |
140 |
ttaccaaattgtctagaataactgctaactagtaaaatatagttga |
185 |
Q |
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| T |
35123424 |
ttaccaaattgtctagaataaccgcttactagttaaatatagttga |
35123469 |
T |
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