View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13163_low_8 (Length: 239)
Name: NF13163_low_8
Description: NF13163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13163_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 6174278 - 6174052
Alignment:
| Q |
1 |
atgaaacaaccttcattcgtgatgcaaactactttattcattaataatactgatggttgattgtttcattaccaggaaactaagaatcttcaacaatcac |
100 |
Q |
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| T |
6174278 |
atgaaacaactttcattcttaatgcaaactactttattccttaataatacttatggttgattgtttcattaccaggaaactaagaatcttcaacaatcac |
6174179 |
T |
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| Q |
101 |
caccaccatttgtgaagaatctacagattccatcttattcttatactaagaaactaaatccaaagttcaaacacttcaatggctgctgagagttcttcaa |
200 |
Q |
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| T |
6174178 |
cgccaccattagtgaagaatctacagattccatcttattcttatactaacaaactaaatc-------caaacgcttcaatggctgctgagagttcttcaa |
6174086 |
T |
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| Q |
201 |
gtaaacctttgaaggattcagaatattctcctat |
234 |
Q |
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| T |
6174085 |
gtaaaccttcaaaggattcagaatattctcctat |
6174052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 6136223 - 6135986
Alignment:
| Q |
1 |
atgaaacaaccttcattcgtgatgcaaactactttattcattaataatactgatggttgattgtttcattaccaggaaactaagaatcttcaacaatcac |
100 |
Q |
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| T |
6136223 |
atgaaaaatccttcattcttaatgcaaactactttattccttaatgatacttatggttgattgtatcattaccaggaaactaagcatcttcaacaatcac |
6136124 |
T |
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| Q |
101 |
caccaccatttgtgaagaatctacagattccatcttattcttatactaagaaactaaatccaaagttcaaacacttcaatggctgctgagagttcttcaa |
200 |
Q |
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| T |
6136123 |
caccaccattagtgaagaatctacaaattccatcatattcttatactaacaaactaaatc-------caaacacctcaatggctgctgagagttcttcaa |
6136031 |
T |
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| Q |
201 |
gtaaac------ctttgaaggattcagaatattctcctattgatt |
239 |
Q |
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| T |
6136030 |
gtaaaccttcttcttcaaaggattcagaatattctcctattgatt |
6135986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 32 - 157
Target Start/End: Original strand, 6119231 - 6119356
Alignment:
| Q |
32 |
ctttattcattaataatactgatggttgattgtttcattaccaggaaactaagaatcttcaacaatcaccaccaccatttgtgaagaatctacagattcc |
131 |
Q |
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||||| || ||||| | ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || | |||||| |
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| T |
6119231 |
ctttactccttaatgacacttatggttgattgtttcattacctggaaactaagaatcttcaacaatcaccaccaccatttgtgaagaaactgcggattcc |
6119330 |
T |
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| Q |
132 |
atcttattcttatactaagaaactaa |
157 |
Q |
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| T |
6119331 |
atcttatccttatactaacaaactaa |
6119356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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