View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13163_low_9 (Length: 235)
Name: NF13163_low_9
Description: NF13163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13163_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6173859 - 6173638
Alignment:
| Q |
1 |
attgaaacatttactcaatgatgtgactcttggagaagaggtgaaagctttgttagttaaattcaattctagagctaatgagctttctgagaaacaaagt |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
6173859 |
attgaaacatttacccaatgatgtgactcttggagaagaggtgaaagctttattagttaaactcaattatagagctaatgagctttctgagaaacaaagt |
6173760 |
T |
|
| Q |
101 |
tctggtattactgatttcaccaaaatctttatagactacacattgaatattgatgaaagaaaactgagcaatgttactcttaaacttcttaatgtggatc |
200 |
Q |
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|||||||||||||||||| ||| |||||| | ||| |||| |||||||||||||| |||||||| |||||||||||||| ||| |||||||||||||| |
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| T |
6173759 |
tctggtattactgatttcgccagaatcttcacagaagccacagtgaatattgatgaaggaaaactgggcaatgttactcttcaacatcttaatgtggatc |
6173660 |
T |
|
| Q |
201 |
ataaagattcaatatccaagct |
222 |
Q |
| |
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||||||||||||| |||||||| |
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|
| T |
6173659 |
ataaagattcaatgtccaagct |
6173638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6135804 - 6135583
Alignment:
| Q |
1 |
attgaaacatttactcaatgatgtgactcttggagaagaggtgaaagctttgttagttaaattcaattctagagctaatgagctttctgagaaacaaagt |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||| |
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|
| T |
6135804 |
attgaaacatttacccaatgatgtgactctaggagaagaggtgaaagctttattagttaaactcaattatagagctaatgagctttctgagaaacaaagt |
6135705 |
T |
|
| Q |
101 |
tctggtattactgatttcaccaaaatctttatagactacacattgaatattgatgaaagaaaactgagcaatgttactcttaaacttcttaatgtggatc |
200 |
Q |
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|| ||||||||||||||||| | |||||| | ||| ||| |||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
6135704 |
tccggtattactgatttcactagaatcttcacagaagctacagtgaatattgatgaaggaaaactgagcaatgttactcttcaacaacttaatgtggatc |
6135605 |
T |
|
| Q |
201 |
ataaagattcaatatccaagct |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
6135604 |
ataaagattcaatatccaagct |
6135583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 29 - 222
Target Start/End: Complemental strand, 37616509 - 37616315
Alignment:
| Q |
29 |
cttggagaagaggtgaaagctttgttagttaaattcaattctagagctaatgagctttctgagaaacaaagttctggtattactgatttcaccaaaatct |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
37616509 |
cttggagaagaggtgaaagctttgttagttaaattcaattatagagctaatgagctttctgagaaacaaagttctggtattattgttttcaccaaaatct |
37616410 |
T |
|
| Q |
129 |
ttatagactacacattgaatattgatgaaagaaaactgagcaatgttactcttaaacttctt-aatgtggatcataaagattcaatatccaagct |
222 |
Q |
| |
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|||||||| ||||||||||||||||||| |||||| |||||||||||| ||||||| |||| |||||||||||||||| ||||||||||||||| |
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| T |
37616409 |
ttatagacaccacattgaatattgatgaaggaaaaccgagcaatgttacccttaaacatcttaaatgtggatcataaagtttcaatatccaagct |
37616315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 222
Target Start/End: Original strand, 22083133 - 22083164
Alignment:
| Q |
191 |
aatgtggatcataaagattcaatatccaagct |
222 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
22083133 |
aatgtggatcataaagattcaatatccaagct |
22083164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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