View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13164_high_1 (Length: 758)
Name: NF13164_high_1
Description: NF13164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13164_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 247 - 755
Target Start/End: Complemental strand, 27305815 - 27305312
Alignment:
| Q |
247 |
ccttaaccaattaaattcttcccgataaattttgagtgtgattttaatttgatgctaatccttaagtgccaatttaatgagtttgagtttttcatttaga |
346 |
Q |
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| T |
27305815 |
ccttaaccaatttaattcttcccgataaattttgagtgtgattttaatttgattctaatccttaagtgccaatttaatgagtttgagtttttcttttgaa |
27305716 |
T |
|
| Q |
347 |
acaaatccaccccaccgatcaacttgaaaagaatcccatttctcctgaacaaattgttaatactccggaacatcggcccaacatttcaacattcgagatg |
446 |
Q |
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| T |
27305715 |
acaaatccactccacccatcaac----aaagaatcccatttctcccgaacaaattgtttataccccagaacatcggcccaatatttcaacatttgagatg |
27305620 |
T |
|
| Q |
447 |
gtctagggtcccaattctcctcatcaacggataatgtaatcaggaggtggtccgtcaaccctctaatgtgtaccacctgaatacagtttgaccaagtcaa |
546 |
Q |
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|||| || ||||||||||||||||||| |||| ||||||||| |||||| | |||||||||||||||| |||| ||||||||||||| ||| ||||| |
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| T |
27305619 |
-tctaaggctccaattctcctcatcaacgaataacgtaatcaggcagtggtctgacaaccctctaatgtgtgccacttgaatacagtttggccatgtcaa |
27305521 |
T |
|
| Q |
547 |
acaccaatcttatgacaacaagaatctatccaaacgacttatagaataactcatcaccgcgataccaattgaaacgacggcccacccaacggaagatcaa |
646 |
Q |
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| T |
27305520 |
acaccaatcttataacaacaagaatctatccaaacgacttatagaataactcattaccgtgataccaattgaaacgacggcccacccaacggtagatcaa |
27305421 |
T |
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| Q |
647 |
ccaacaaattatttcggtgaagcaataaactatataatcagtttaccaaatttgatcaagttccttaatgtacaaagttttcttgaacaagtcaacaaac |
746 |
Q |
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| T |
27305420 |
ccaacaaattatttcggtgaagcaataaactacataattagtttaccaaatttgatcaagttccttaatgtacaaagttttcttgaacaagtcaacaaat |
27305321 |
T |
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| Q |
747 |
ctatgcttc |
755 |
Q |
| |
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||||||||| |
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| T |
27305320 |
ctatgcttc |
27305312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 27306129 - 27306029
Alignment:
| Q |
1 |
ctcacattaagcaagaatttgtaggataatttactcctttatcttggagacaccatcataaatatagttgttatgccaaattggaaaagattcaccatca |
100 |
Q |
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| T |
27306129 |
ctcacattaagcaagaatttgtaggataatttactcctttatcttggagacaccatcataaatatagttgttatgccaaattggaaaagattcaccatca |
27306030 |
T |
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| Q |
101 |
t |
101 |
Q |
| |
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| T |
27306029 |
t |
27306029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 87 - 222
Target Start/End: Complemental strand, 27305949 - 27305812
Alignment:
| Q |
87 |
aagattcaccatcataaattcagcattgactgttgccaacaaatattagtattcac--tcttgacaacaaatacaaatcagcagtaagaacatgcaattc |
184 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||||| |||||||||| ||||||| | |||||||||||| | ||||||||||||||||| |
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| T |
27305949 |
aagattcaccatcataaattcagctttaactgttgccaacaaatactagtattcacactcttgacgataaatacaaatcaaccgtaagaacatgcaattc |
27305850 |
T |
|
| Q |
185 |
gtccacttcagcctctagaagcaaagcattctcccctt |
222 |
Q |
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||||||| ||||||||||||||| |||||||||||| |
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| T |
27305849 |
ccccacttcggcctctagaagcaaatcattctcccctt |
27305812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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