View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13164_low_2 (Length: 355)
Name: NF13164_low_2
Description: NF13164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13164_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 2217764 - 2218080
Alignment:
| Q |
17 |
ttaatcatgaaagacattttttcatatacatgggggagtttgttttccttctattagaccctttaaaagaaacaagcagaaataaacaaaaagaaatcat |
116 |
Q |
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| T |
2217764 |
ttaatcataaaagacattttttcatatacatgggggagtttgtt--ccttctattagaccctttaaaagaaa----------taaagaaaaagaaatcat |
2217851 |
T |
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| Q |
117 |
atagaactttttaaatgctatgaaatgactacaaatatgtnnnnnnntgtctagatttctattttattagaactatattgtgacgaaatatatatttaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2217852 |
atagaactttttaaatgctatgaaatgactacaaatatgtaaaata-tgtctaaatttctatttcattagaactatattgtgacgaaatatatatttaaa |
2217950 |
T |
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| Q |
217 |
tcgatcatcta-----acaaatatttataataannnnnnnnagtcttgacatattgcatgatcgattcatataaatgagttgtatgaccatatagctgtt |
311 |
Q |
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||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2217951 |
tcgatcatctactatgacaaatatttacaataattttttttagtcttgacatattgcatgatcgattcatataaatgagttgtatgaccatatagctgtt |
2218050 |
T |
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| Q |
312 |
aaatacataaattttgtatgtttgaaattg |
341 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2218051 |
aaatacataaattttgtatgtttgaaattg |
2218080 |
T |
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