View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13165_low_1 (Length: 663)
Name: NF13165_low_1
Description: NF13165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13165_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 35978135 - 35977869
Alignment:
| Q |
1 |
ctctactttaaccctccattcaatttccactcaacttttggtggaaatacttttaatgtgggtctgattaaaaatgttctttcctttctcttgnnnnnnn |
100 |
Q |
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| T |
35978135 |
ctctactttaaccctccattcaatttccactcaacttttggtggaaatacttttaatgtgggtctgattaaaaatgttctttcctttctcttgttttttt |
35978036 |
T |
|
| Q |
101 |
nn-cgaaatcaaactatggaaatatcttagaatttgagctttctttccaccatctttcacctcaattaatatatgagggtgattgctgatgattttgatc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35978035 |
tttcgaaatcaaactatggaaatatcttagaatttgagctttctttccaccatctttcacctcaattaatatatgagggtgattgctgatgattttgatc |
35977936 |
T |
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| Q |
200 |
ttaccacccacttggagtcgacaattaaaataacacgtgggataggagaggatgcaatcaagcagtc |
266 |
Q |
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| T |
35977935 |
ttaacacccacctggagtcgacaattaaaataacacatgggataggagaggatgcaatcaagcagtc |
35977869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 315 - 493
Target Start/End: Complemental strand, 35977820 - 35977646
Alignment:
| Q |
315 |
aaaccaaattacatattatttcatcaaaatgatgggaggggatgcaataaccaaatatattttcaaacaatcgaacatggcttaaacnnnnnnnnnnnng |
414 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35977820 |
aaaccaaattacatattatttcatcaa--tgatgggaggggatgcaataaccaaatatattttcaaacaatcgaacatggcttaaactttttttttt--g |
35977725 |
T |
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| Q |
415 |
acaaaaaacatggcttaaacatatgaggttagtttaagtggtgatgtttcaaaatcaacacgtatttttctcaaacaaa |
493 |
Q |
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| T |
35977724 |
acaaaaaacatggcttaaacatatgaggttagtttaagtggtgatgtttcaaaatcaacacgtatttttgtcaaacaaa |
35977646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 494 - 638
Target Start/End: Complemental strand, 35977610 - 35977466
Alignment:
| Q |
494 |
ttttctacgtaagcctattcctaggttcccattaactacaatcatgtttcattaaaattaatctatgaattttgtgaacccagataattattcatgatca |
593 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
35977610 |
ttttctaagtaagcctattcctaggttcccattaactacaatcatgtttcattaaaattaatctatgaattttgtggacccagataattattcatggtca |
35977511 |
T |
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| Q |
594 |
cttagaatcttattaattaactatagttatataacgcaattgggt |
638 |
Q |
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||||||||| ||||||||||||||| | |||||||| |||||||| |
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| T |
35977510 |
cttagaatcctattaattaactatactcatataacgtaattgggt |
35977466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 1393433 - 1393399
Alignment:
| Q |
18 |
attcaatttccactcaacttttggtggaaatactt |
52 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
1393433 |
attcaatttccactgaacttttggtggaaatactt |
1393399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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