View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13167_high_2 (Length: 477)
Name: NF13167_high_2
Description: NF13167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13167_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 30707575 - 30708035
Alignment:
| Q |
1 |
ctgcgaggagtggtgaaactctctctcaagaaatttaacactgtattcgcatggctgaatttgaatcaaggatttctggttaaactgaaagagatcgttt |
100 |
Q |
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| T |
30707575 |
ctgcgaggagtggtgaaactctctctcaagaaatttaacactgtattcgcatggctgaatttgaatcaaggatttctggttaaactgaaagagatcgttt |
30707674 |
T |
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| Q |
101 |
atcatctcatggaagtgttcatatgccaaacaacctcgtttatttatatttgaaaaaactgtgcagtgtgctgactgtggccaaaacatgatttggggag |
200 |
Q |
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| T |
30707675 |
atcatctcatgcaagtgttcatatgccaaacaacctcgtttatttatatttgaaaaaactgtgcagtgtgctgactgtggccaaaacctgatttggggag |
30707774 |
T |
|
| Q |
201 |
tcaaaaaacattatattgatctccaccacatgggcccattgtgggggtatctttagttaacaagaaacagaataatgaagcaattcacgaaaaacaaaag |
300 |
Q |
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| T |
30707775 |
tcaaaaaacattatattgatctccaccacatgggcccattgtgggggtatctttagttaacaagaaacagaataatgaagcaattcatgaaaaacaaaag |
30707874 |
T |
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| Q |
301 |
acaacaatgaagcata-ttttttgttttattattcttgaatgtgactcacacattcacaagttacatacttctgcttttgatcaaagatgcccctgaaca |
399 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30707875 |
acaacaatgaagcatatttttttgttttattattcttgaatgtgactcacacattcacaagttacatacttctgcttttgatcaaagatgcccctgaaca |
30707974 |
T |
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| Q |
400 |
aagtgaaacattatatcaactgaaaaacaaatttgaaacagttaccattgaagatgattct |
460 |
Q |
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| T |
30707975 |
aagtgaaacattatatcaactgaaaaacaaatttgaaacagttaccattgaagatgattct |
30708035 |
T |
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