View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13167_high_5 (Length: 337)
Name: NF13167_high_5
Description: NF13167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13167_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 30707573 - 30707242
Alignment:
| Q |
1 |
cccacccaactcgagggattagtcactgcaattgcgcgcaaaggatatccggttcacaacaacaaaacaaacacgttctctgtgtaagagaactcacaaa |
100 |
Q |
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| T |
30707573 |
cccacccaactcgagggattagtcactgcaattgtgcgcaaaggatatccggttcacaacaacaaaacaaacacgttctccgtgtaagagaactcacaaa |
30707474 |
T |
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| Q |
101 |
aacaataatggagaaccaggagagcagtatgagaggctcaagatggtctctcaagggaactactgctctagttactggtggaactcgtggaatcggtcat |
200 |
Q |
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| T |
30707473 |
aacaacaatggagaaccaggagagcagtatgagaggctcaagatggtctctcaagggaactactgctctagttactggtggaactcgtggaatcggtcat |
30707374 |
T |
|
| Q |
201 |
gctgtggtggaggaactagctgagtttggtgccacagtgttcacttgctctaggaatgaagaagagctgaataaatgcttaaatgagtggaaagagaagg |
300 |
Q |
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| T |
30707373 |
gctgtggtggaggaactagctgagtttggtgccacagtgttcacttgctctaggaatgaagaagagctgaataaatgcttaaatgagtggaaagagaagg |
30707274 |
T |
|
| Q |
301 |
gtttttctgtctatggatcggtctgtgctgct |
332 |
Q |
| |
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| T |
30707273 |
gtttttctgtctatggatcggtttgtgatgct |
30707242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 94 - 319
Target Start/End: Complemental strand, 30719846 - 30719621
Alignment:
| Q |
94 |
tcacaaaaacaataatggagaaccaggagagcagtatgagaggctcaagatggtctctcaagggaactactgctctagttactggtggaactcgtggaat |
193 |
Q |
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| T |
30719846 |
tcacaaaaacaagaatggcgaacgcagagagcagtagcagaagctcaagatggtccctcaagggattcactgctctcgtcaccggcggaacacgtggaat |
30719747 |
T |
|
| Q |
194 |
cggtcatgctgtggtggaggaactagctgagtttggtgccacagtgttcacttgctctaggaatgaagaagagctgaataaatgcttaaatgagtggaaa |
293 |
Q |
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||| |||||| | ||||| ||||| |||||||||||||||||||| | |||||| |||||||| |||| |||||||||||| ||||||||||||||||| |
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| T |
30719746 |
cggacatgctatcgtggaagaactcgctgagtttggtgccacagtctacacttgttctaggaaccaagaggagctgaataaacgcttaaatgagtggaaa |
30719647 |
T |
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| Q |
294 |
gagaagggtttttctgtctatggatc |
319 |
Q |
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||||| ||||||||||| |||||||| |
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| T |
30719646 |
gagaaaggtttttctgtttatggatc |
30719621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 136 - 319
Target Start/End: Complemental strand, 30702253 - 30702070
Alignment:
| Q |
136 |
gctcaagatggtctctcaagggaactactgctctagttactggtggaactcgtggaatcggtcatgctgtggtggaggaactagctgagtttggtgccac |
235 |
Q |
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||||||||||||| ||||||||| || ||||| || || || ||||||||||| |||||||||||| | || |||||||| |||||||||||||| | |
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| T |
30702253 |
gctcaagatggtccctcaagggattcacagctcttgtcaccggcggaactcgtgggatcggtcatgctatcgtagaggaacttgctgagtttggtgctat |
30702154 |
T |
|
| Q |
236 |
agtgttcacttgctctaggaatgaagaagagctgaataaatgcttaaatgagtggaaagagaagggtttttctgtctatggatc |
319 |
Q |
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| T |
30702153 |
agtgtacacttgttctaggaatgaagaagaattgaataaatgcttaaatgagtggaaggagaaaggtttttctgtttatggatc |
30702070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 30796994 - 30797047
Alignment:
| Q |
137 |
ctcaagatggtctctcaagggaactactgctctagttactggtggaactcgtgg |
190 |
Q |
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|||||||||||| ||||| |||| |||||||| || ||||||||||||||||| |
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| T |
30796994 |
ctcaagatggtccctcaaaggaaagactgctctcgtcactggtggaactcgtgg |
30797047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 43621338 - 43621281
Alignment:
| Q |
10 |
ctcgagggattagtcactgcaattgcgcgcaaaggatatccggttcacaacaacaaaa |
67 |
Q |
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| T |
43621338 |
ctcgagggattagtctctgtagttgcgcgcagaggatacccgattcacaacaaaaaaa |
43621281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 27763835 - 27763879
Alignment:
| Q |
10 |
ctcgagggattagtcactgcaattgcgcgcaaaggatatccggtt |
54 |
Q |
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||||||||||||||| | ||| ||||||||| ||||||||||||| |
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| T |
27763835 |
ctcgagggattagtctccgcagttgcgcgcagaggatatccggtt |
27763879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 46864206 - 46864242
Alignment:
| Q |
11 |
tcgagggattagtcactgcaattgcgcgcaaaggata |
47 |
Q |
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|||||||||||||| ||||| |||||||||||||||| |
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| T |
46864206 |
tcgagggattagtctctgcagttgcgcgcaaaggata |
46864242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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