View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13167_high_6 (Length: 213)

Name: NF13167_high_6

Description: NF13167

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF13167_high_6

[»] chr3 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr3 (Bit Score: 117; Significance: 9e-60; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 117; E-Value: 9e-60

Query Start/End: Original strand, 11 - 197

Target Start/End: Original strand, 25602395 - 25602589

Alignment:

Q	11	agaaaatatgtgagaaaagtcggtcttctattactatatccactcttaaggtacgttatgatgttttcattctttaatttcaccttcttaaaattcttta	110	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	25602395	agaaaatatgtgagaaaggtcggtcttctattactatatccactcttaaggtacgttatgatgttttcattctttaatttcaccttcttaaaattcttta	25602494	T

Q	111	--------tttannnnnnngtaaattctgtttaaaatcaactgacttgcataaatgatcttattaactctcattccttaatgtgtaggtggttct	197	Q
		\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	25602495	tatttattttttttgttttgtaaattctgtttaaaatcaactgacttgcctaactgatcttattaaccctaattccttaatgtgtaggttgttct	25602589	T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 123 - 189

Target Start/End: Complemental strand, 55116639 - 55116573

Alignment:

Q	123	taaattctgtttaaaatcaactgacttgcataaatgatcttattaactctcattccttaatgtgtag	189	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\| \|\| \|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|
T	55116639	taaatcctgtttaaaatcaattgacttgcatagttgatcctattcaccctcattcctcattgtgtag	55116573	T

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