View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13167_low_1 (Length: 639)
Name: NF13167_low_1
Description: NF13167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13167_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 563; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 19 - 632
Target Start/End: Original strand, 11885126 - 11885740
Alignment:
| Q |
19 |
actagaagatgttcaaagtattaaatagattggaccagggagcattatccttggtttccttaatctgtttgctcggagttttgtttttaaccctgacatg |
118 |
Q |
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| T |
11885126 |
actagaagatgttcaaagtattaaatagattggaccagggagcattatccttggtttccttaatctgtttgctcggagttttgtttttaaccctgacatg |
11885225 |
T |
|
| Q |
119 |
caacaataatccacacctctgatttgaaaagcttattgaaaatatggttaaacaaggatcaaattatataatcctaaaatctccaacaaggtgctcggat |
218 |
Q |
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| T |
11885226 |
caacaataatccacacctctgatttgaaaagcttattgaaaatatggttaaacaaggatcaaattatataatcctaaaatctccaacaaggtgctcggat |
11885325 |
T |
|
| Q |
219 |
tatataatccgaac-gaaggcctttttgaaattgagagggcgcgcgtgaagagattatagtgggaaaagaaacaaattataaatgaatattaacatcatg |
317 |
Q |
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| T |
11885326 |
tatataatccgaaccgaaggcctttttgaaattgagagggcgcgtgtgaagagattatagtgggaaaagaaacaaattataaatgaatattaacatcatg |
11885425 |
T |
|
| Q |
318 |
tgctatgtttcatcaccaaaaggagcataataaatagatgcataagtgtccttgttctcattcttcaccctacgttgtttttcaaaaagaaaagtaaaat |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11885426 |
tgctatgtttcatcaccaaaaggagcataataaatagatgcataagtgtccttgttctcattcttcaccctacattgtttttcaaaaagaaaagtaaaat |
11885525 |
T |
|
| Q |
418 |
ggtgggcttcgtcgtctaccgtcagctccacttcgatcatataatttttattgtcaacctgtacgacactaatatcaccacaaatacttctgccgcctcc |
517 |
Q |
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| T |
11885526 |
ggtgggcttcgtcgtcgactgtcagctccacttagaccatataatttttattgtcaacctgtacgacactaatatcaccacagatacttccgccgcctcc |
11885625 |
T |
|
| Q |
518 |
ttctgtgaaaactcgatcgaaacaacactcctccttcgtagcgatgtataccccaagtctagcttcttcgtcaacttttccatcgatcccaaggtaaaca |
617 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11885626 |
ttctgtgaaaactcgatcgaaacaacgctcctccttcgcagcgatgtataccccaagtctaccttcttcgtcaacttttccatcgatcccaaggtaaaca |
11885725 |
T |
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| Q |
618 |
cgttgaagttctgtg |
632 |
Q |
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| T |
11885726 |
cgttgaagttctgtg |
11885740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 77 - 234
Target Start/End: Original strand, 11914199 - 11914347
Alignment:
| Q |
77 |
cttaatctgtttgctcggagttttgtttttaaccctgacatgcaacaataatccacacctctgatttgaaaagcttattgaaaatatggttaaacaagga |
176 |
Q |
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||||| || |||||| |||||| || |||||||| || |||||||||| |||||| | |||||||||| |||||||||||||||||||| | |
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| T |
11914199 |
cttaaactctttgcttggagttatgattttaaccgtggcatgcaacaacaatccata-------tttgaaaagccgattgaaaatatggttaaaca--ca |
11914289 |
T |
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| Q |
177 |
tcaaattatataatcctaaaatctccaacaaggtgctcggattatataatccgaacga |
234 |
Q |
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| T |
11914290 |
tcaaattatataatcctaaaatctttaaaaatgtgtttgaattatataatccaaacga |
11914347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 14607239 - 14607188
Alignment:
| Q |
181 |
attatataatcctaaaatctccaacaaggtgctcggattatataatccgaac |
232 |
Q |
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||||||||||||||||||| | || |||| | |||||||||||||||||||| |
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| T |
14607239 |
attatataatcctaaaatcccaaaaaaggagttcggattatataatccgaac |
14607188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 479
Target Start/End: Original strand, 13867625 - 13867702
Alignment:
| Q |
402 |
aaaagaaaagtaaaatggtgggcttcgtcgtctaccgtcagctccacttcgatcatataatttttattgtcaacctgt |
479 |
Q |
| |
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||||||||| ||||||||||||| ||||||| ||||||||| | || | |||||||| |||| || |||||||||| |
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| T |
13867625 |
aaaagaaaaataaaatggtgggcaccgtcgtcgaccgtcagcccaacgtggatcatatcatttacatcgtcaacctgt |
13867702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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