View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13168_high_1 (Length: 978)
Name: NF13168_high_1
Description: NF13168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13168_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 16 - 626
Target Start/End: Complemental strand, 52381166 - 52380556
Alignment:
| Q |
16 |
caataacaatagtagagactcggtgtcatttgtgcttgatgtagcacctttggattaaacaaattcacgaaagtatcggagttcattttgacttctttca |
115 |
Q |
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| T |
52381166 |
caataacaatagtagagactcggtgtcatctgtgcttgatgtagcacctttggattaaacaaattcacgaaagtatcggagttcattttgacttctttca |
52381067 |
T |
|
| Q |
116 |
aatgtaattataatnnnnnnnnnnnnnnnnnnncatgtttggttacaaaattaattttgcttccaaactctagtttgaatataagtcatactcatagata |
215 |
Q |
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| T |
52381066 |
aatgtaattataataaaataaaaaaataaaaaacatgtttggttacaaaattaattttgcttccaaactctagtttgactataagtcata------gata |
52380973 |
T |
|
| Q |
216 |
ataaagtagctttggcattacattgaaaaatgcacaacaagttttacattagacttgctttaagatcaaaaacatctaaagataaatcacatcacttaaa |
315 |
Q |
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| T |
52380972 |
ataaagtagctttggcattacgttgaaaaatgcacaccaagttttacattagacttgctttaagatcaaaaacatctaaagataaatcacatcacttaaa |
52380873 |
T |
|
| Q |
316 |
ataaattgtcatcaatcccattgaacaaaatcaagtacatcaaaaagtaacagagtttcatcaaacctttggatgatacgcgcaaaatctgagaaatgtc |
415 |
Q |
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||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| | | ||||||||||||| | | |||||||||||||| || |
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| T |
52380872 |
ataaattttcatcaaacccattgaacaaaatcaagttcatcaaaaagtaacagagttaaaacgaacctttggatgaaaagtgcaaaatctgagaagtgga |
52380773 |
T |
|
| Q |
416 |
agatcgtcctagattaaccccctgcacacacagaaagataaattagtatgatagtgatcactgt------gcaaaaacaaaatcagtaggggacgaaagt |
509 |
Q |
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| T |
52380772 |
agatagtcctagtttaacaccctgcacacacagaaagataaattagtatgatcgtgatcactgtgcaactgcaaaaacaaaatcagtaggggaagaaagc |
52380673 |
T |
|
| Q |
510 |
gtacctgagcggcgaatagagagcgtgtgagtaaggaattggtacgaagcaaactcgccatagaagtttagtaactatgcgggttcaaaggttactcctt |
609 |
Q |
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| T |
52380672 |
gtacctgagcggcgaatagagagcgtgtgagtaaggaattggtacgaagcaaactcgccatagaagtttagtaactatgcgggttcaaaggttactcctt |
52380573 |
T |
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| Q |
610 |
aggtgttgattacacag |
626 |
Q |
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| T |
52380572 |
aggtgttgattacacag |
52380556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 869 - 970
Target Start/End: Complemental strand, 52380322 - 52380221
Alignment:
| Q |
869 |
gagaagactgcactacttaatgggccgggcttgtcattttcactaatgggtacccggtactttttatcaaattaataggctattacttttcccacctatg |
968 |
Q |
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| T |
52380322 |
gagaagactgcactacttaatgggccgggcttgtcattttcactaatgggtacccggtactttttatcaaattaatagactattacttttcccacctatg |
52380223 |
T |
|
| Q |
969 |
ct |
970 |
Q |
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|| |
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| T |
52380222 |
ct |
52380221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 692 - 783
Target Start/End: Complemental strand, 52380490 - 52380399
Alignment:
| Q |
692 |
ttatgttgatgcatgtcagaagtgaagaagtgttatattgattgattgattgattggggtttatgattctacggggggtttgatttccctcc |
783 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
52380490 |
ttatgttgatgcatgtcagaagtgaagaagtgttatattgattgattgattgattagggtttatgattctacggggggtttgatttccctcc |
52380399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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