View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13168_high_2 (Length: 493)

Name: NF13168_high_2
Description: NF13168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13168_high_2
NF13168_high_2
[»] chr1 (7 HSPs)
chr1 (97-481)||(29127667-29128063)
chr1 (14-110)||(29127213-29127310)
chr1 (92-245)||(29127335-29127503)
chr1 (301-387)||(39567034-39567120)
chr1 (79-126)||(29230060-29230107)
chr1 (92-124)||(4769327-4769359)
chr1 (76-108)||(50608269-50608301)
[»] chr4 (5 HSPs)
chr4 (84-130)||(32369925-32369971)
chr4 (76-128)||(34589721-34589773)
chr4 (86-128)||(31277039-31277081)
chr4 (75-128)||(37496695-37496748)
chr4 (84-128)||(18513256-18513300)
[»] chr6 (3 HSPs)
chr6 (79-128)||(34625729-34625778)
chr6 (83-128)||(34598537-34598582)
chr6 (84-124)||(17422274-17422314)
[»] chr8 (2 HSPs)
chr8 (83-125)||(2517106-2517148)
chr8 (83-128)||(34863480-34863525)
[»] chr7 (2 HSPs)
chr7 (82-128)||(38134421-38134467)
chr7 (76-128)||(35238199-35238251)
[»] chr5 (2 HSPs)
chr5 (97-126)||(465600-465629)
chr5 (75-128)||(9878047-9878100)
[»] chr3 (2 HSPs)
chr3 (84-128)||(25074789-25074833)
chr3 (92-128)||(49636841-49636877)


Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 97 - 481
Target Start/End: Original strand, 29127667 - 29128063
Alignment:
Q  97 atttgagaaaatgagttaattgaatgtaatcaa---------tgttggtgttagggcatttgt---tgttgtttaatggttgcttggaaatttgaatttt 184  Q
    |||||||||||||||||||||||||||||||||         |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  29127667 atttgagaaaatgagttaattgaatgtaatcaaatgtgtcaatgttggtgttagggcatttgttgttgttgtttaatggttgcttggaaatttgaatttt 29127766  T
Q  185 gtgtttggattttgggatccttgactttattatgtgattgatgatttacaagacaaatgtgatgggtacacttaatatgttggggctagcaaagagaatt 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29127767 gtgtttggattttgggatccttgactttattatgtgattgatgatttacaagacaaatgtgatgggtacacttaatatgttggggctagcaaagagaatt 29127866  T
Q  285 ggggcgaggtttcttttaactagtactagtgaggtatatggtgatcctttggagcatcctcagaaagagacttactgggggaatgttaatccaattggtg 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29127867 ggggcgaggtttcttttaactagtactagtgaggtatatggtgatcctttggagcatcctcagaaagagacttactgggggaatgttaatccaattggtg 29127966  T
Q  385 agtgagtttataaactgaaattttgctgagaagttgtgtttttatggtggcttaattattatgttggaattttaggtgagaggagttgttatgatga 481  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29127967 agtgagtttataaactgaaattttgctgagaagttgtgtttttatggtggcttaattattatgttgaaattttaggtgagaggagttgttatgatga 29128063  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 29127213 - 29127310
Alignment:
Q  14 ccattctttcttgtttatttatttatctacatgcttccatttgaatttgttgtatgaagca-tgacacattgacaccgataatcatttgagaaaatga 110  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  29127213 ccattctttgttgtttatttatttatatacatgcttccatttgaatttgttgtatgaagcactgacacgttgacaccgataatcatttgagaaaatga 29127310  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 92 - 245
Target Start/End: Original strand, 29127335 - 29127503
Alignment:
Q  92 taatcatttgagaaaatgagttaattgaatgtaatc---------aatgttggtgttagggcatttgtt------gttgtttaatggttgcttggaaatt 176  Q
    |||| |||||||| ||||||||||||||||||||||         | ||||||||||||| ||||||||      |||||| |||||||| |||||| ||    
T  29127335 taatgatttgagataatgagttaattgaatgtaatcgtatgtgtcagtgttggtgttaggacatttgtttttgtagttgttcaatggttgtttggaattt 29127434  T
Q  177 tgaattttgtgtttggattttgggatccttgactttattatgtgattgatgatttacaagacaaatgtg 245  Q
      ||||||||| ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||    
T  29127435 ctaattttgtgattggatttttggatccttcactttattatgtgattggtgatttacaagacaaatgtg 29127503  T

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Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 301 - 387
Target Start/End: Complemental strand, 39567120 - 39567034
Alignment:
Q  301 taactagtactagtgaggtatatggtgatcctttggagcatcctcagaaagagacttactgggggaatgttaatccaattggtgagt 387  Q
    |||| ||||| |||||||| |||||||||||| |||||||||||||||| |||||||||||||| || |||||||||||||||||||    
T  39567120 taacaagtacaagtgaggtttatggtgatcctctggagcatcctcagaaggagacttactggggaaacgttaatccaattggtgagt 39567034  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 29230060 - 29230107
Alignment:
Q  79 acattgacaccgataatcatttgagaaaatgagttaattgaatgtaat 126  Q
    |||||||||||| |||| ||||||||||||||  ||||||||||||||    
T  29230060 acattgacaccggtaataatttgagaaaatgacataattgaatgtaat 29230107  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 4769359 - 4769327
Alignment:
Q  92 taatcatttgagaaaatgagttaattgaatgta 124  Q
    |||| ||||||||||||||||||||||||||||    
T  4769359 taataatttgagaaaatgagttaattgaatgta 4769327  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 50608301 - 50608269
Alignment:
Q  76 gacacattgacaccgataatcatttgagaaaat 108  Q
    |||||||||||||||||||| ||||||||||||    
T  50608301 gacacattgacaccgataataatttgagaaaat 50608269  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 32369971 - 32369925
Alignment:
Q  84 gacaccgataatcatttgagaaaatgagttaattgaatgtaatcaat 130  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||    
T  32369971 gacaccgataataatttgagaaaatgaattaattgaatgtaatcaat 32369925  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 34589773 - 34589721
Alignment:
Q  76 gacacattgacaccgataatcatttgagaaaatgagttaattgaatgtaatca 128  Q
    |||||||||||||||||||  ||||||||||||||  ||||| ||||||||||    
T  34589773 gacacattgacaccgataacaatttgagaaaatgacataattcaatgtaatca 34589721  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 31277081 - 31277039
Alignment:
Q  86 caccgataatcatttgagaaaatgagttaattgaatgtaatca 128  Q
    |||||||||| ||||||||||||||  ||||||||||||||||    
T  31277081 caccgataataatttgagaaaatgaactaattgaatgtaatca 31277039  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 37496695 - 37496748
Alignment:
Q  75 tgacacattgacaccgataatcatttgagaaaatgagttaattgaatgtaatca 128  Q
    |||||| ||||||||||||||  |||||||||||||  ||||| ||||||||||    
T  37496695 tgacacgttgacaccgataattttttgagaaaatgacataattcaatgtaatca 37496748  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 18513300 - 18513256
Alignment:
Q  84 gacaccgataatcatttgagaaaatgagttaattgaatgtaatca 128  Q
    |||||||||||| ||||||||||||||  ||||| ||||||||||    
T  18513300 gacaccgataataatttgagaaaatgacataattcaatgtaatca 18513256  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 34625729 - 34625778
Alignment:
Q  79 acattgacaccgataatcatttgagaaaatgagttaattgaatgtaatca 128  Q
    |||| |||||||||||| |||||||||||||| |||||||||||||||||    
T  34625729 acatcgacaccgataataatttgagaaaatgaattaattgaatgtaatca 34625778  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 34598537 - 34598582
Alignment:
Q  83 tgacaccgataatcatttgagaaaatgagttaattgaatgtaatca 128  Q
    ||||||||||||| |||||||||||||| ||||||| |||||||||    
T  34598537 tgacaccgataataatttgagaaaatgaattaattggatgtaatca 34598582  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 17422314 - 17422274
Alignment:
Q  84 gacaccgataatcatttgagaaaatgagttaattgaatgta 124  Q
    |||||||||||| ||||||||||||||  ||||||||||||    
T  17422314 gacaccgataataatttgagaaaatgatataattgaatgta 17422274  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 2517106 - 2517148
Alignment:
Q  83 tgacaccgataatcatttgagaaaatgagttaattgaatgtaa 125  Q
    |||||||| |||| |||||||||||||| ||||||||||||||    
T  2517106 tgacaccggtaataatttgagaaaatgaattaattgaatgtaa 2517148  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 34863480 - 34863525
Alignment:
Q  83 tgacaccgataatcatttgagaaaatgagttaattgaatgtaatca 128  Q
    |||||| |||||| |||||| ||||||| |||||||||||||||||    
T  34863480 tgacacggataattatttgaaaaaatgacttaattgaatgtaatca 34863525  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 38134467 - 38134421
Alignment:
Q  82 ttgacaccgataatcatttgagaaaatgagttaattgaatgtaatca 128  Q
    |||||||||||||| ||||||||||||||  ||||| ||||||||||    
T  38134467 ttgacaccgataataatttgagaaaatgacataattcaatgtaatca 38134421  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 35238251 - 35238199
Alignment:
Q  76 gacacattgacaccgataatcatttgagaaaatgagttaattgaatgtaatca 128  Q
    ||||||||||||||||||||  |||||||||||||  ||||| ||| ||||||    
T  35238251 gacacattgacaccgataatattttgagaaaatgacataattcaatataatca 35238199  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 126
Target Start/End: Original strand, 465600 - 465629
Alignment:
Q  97 atttgagaaaatgagttaattgaatgtaat 126  Q
    ||||||||||||||||||||||||||||||    
T  465600 atttgagaaaatgagttaattgaatgtaat 465629  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 9878100 - 9878047
Alignment:
Q  75 tgacacattgacaccgataatcatttgagaaaatgagttaattgaatgtaatca 128  Q
    |||||| | |||||| ||||| ||||||||| |||| |||||||||||||||||    
T  9878100 tgacacgtcgacaccaataataatttgagaatatgaattaattgaatgtaatca 9878047  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 25074789 - 25074833
Alignment:
Q  84 gacaccgataatcatttgagaaaatgagttaattgaatgtaatca 128  Q
    |||||||||||| ||||||||||||||  ||||||| ||||||||    
T  25074789 gacaccgataataatttgagaaaatgacataattgagtgtaatca 25074833  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 49636877 - 49636841
Alignment:
Q  92 taatcatttgagaaaatgagttaattgaatgtaatca 128  Q
    |||| |||||||||||||| |||||||||||||||||    
T  49636877 taataatttgagaaaatgaattaattgaatgtaatca 49636841  T

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