View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13168_low_4 (Length: 434)
Name: NF13168_low_4
Description: NF13168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13168_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 16 - 416
Target Start/End: Complemental strand, 29127104 - 29126704
Alignment:
| Q |
16 |
catcatgacgaattaactcaaacctagggttcccaaacaaatgaaccaaattctctttcctaccagtnnnnnnnttatcaataacaataacatcattccc |
115 |
Q |
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| T |
29127104 |
catcatgacgaattaactcaaacctagggttcccaaacaaatgaaccaaattctctttcctaccagtaaaaaaattatcaataacaataacatcattccc |
29127005 |
T |
|
| Q |
116 |
tctaccaatcaacttatcaaccaaatgacttccaacaaaaccagcaccaccggtaaccaccactctcaacctccgaccaccaatacccgccggaatccgc |
215 |
Q |
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| T |
29127004 |
tctaccaatcaacttatcaaccagatgacttccaacaaaaccagcaccaccggtaaccaccactctcaacctccgaccaccaattcccgccggaatccgc |
29126905 |
T |
|
| Q |
216 |
cccactctaagggatgcaccctcgttgccggtgttgaaccggaccaacccagatctaggtaaaaacgaaccggcctccggtggacttatgcgtgaaagcg |
315 |
Q |
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| T |
29126904 |
cccactctaagggatgcaccctcgttgccggtgttgaaccggaccaacccagatctaggtaaaaacaaaccggcctccggtggacttatgcgtgaaagcg |
29126805 |
T |
|
| Q |
316 |
tgggttgaatgatgaagaaagttgaaccgatcaaaattccgacgaggatgaagagaagacgttgttctcgtaagaggtagttgatcgatctggggagggt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29126804 |
tgggttgaatgatgaagaaagttgaaccgatcaaaattccgacgaggatgaagagaagacgttgttctcgtaagaggtagttgatcgatctggggagggt |
29126705 |
T |
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| Q |
416 |
t |
416 |
Q |
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| T |
29126704 |
t |
29126704 |
T |
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