View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13168_low_7 (Length: 295)

Name: NF13168_low_7
Description: NF13168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13168_low_7
NF13168_low_7
[»] chr4 (14 HSPs)
chr4 (20-295)||(39238816-39239092)
chr4 (179-295)||(4460193-4460309)
chr4 (143-295)||(4460402-4460561)
chr4 (207-291)||(51355989-51356072)
chr4 (132-174)||(30728572-30728614)
chr4 (196-291)||(51355819-51355913)
chr4 (208-282)||(2210434-2210506)
chr4 (32-101)||(8131763-8131833)
chr4 (230-295)||(30728499-30728565)
chr4 (206-295)||(39239061-39239147)
chr4 (132-178)||(8131654-8131700)
chr4 (31-79)||(4460261-4460310)
chr4 (53-98)||(4460426-4460471)
chr4 (180-216)||(33641955-33641991)
[»] chr1 (9 HSPs)
chr1 (31-168)||(35819933-35820072)
chr1 (192-295)||(35820037-35820140)
chr1 (56-131)||(25721247-25721322)
chr1 (53-131)||(33096143-33096221)
chr1 (33-123)||(26308651-26308742)
chr1 (179-295)||(23395139-23395255)
chr1 (207-293)||(33096054-33096139)
chr1 (209-295)||(7323285-7323373)
chr1 (135-175)||(26308785-26308825)
[»] chr3 (22 HSPs)
chr3 (47-291)||(23564234-23564487)
chr3 (192-295)||(23564148-23564252)
chr3 (115-295)||(11413273-11413459)
chr3 (132-295)||(52417893-52418064)
chr3 (115-295)||(29070030-29070210)
chr3 (209-291)||(30889102-30889182)
chr3 (179-295)||(6587943-6588055)
chr3 (179-295)||(36618855-36618968)
chr3 (31-134)||(3837121-3837225)
chr3 (206-293)||(29069845-29069932)
chr3 (132-259)||(3837254-3837388)
chr3 (56-129)||(11413476-11413549)
chr3 (194-294)||(30889346-30889445)
chr3 (195-295)||(47255507-47255607)
chr3 (183-295)||(49261980-49262089)
chr3 (207-295)||(36859733-36859820)
chr3 (56-126)||(36618693-36618763)
chr3 (57-125)||(52418131-52418199)
chr3 (35-98)||(36618835-36618897)
chr3 (52-125)||(21355647-21355720)
chr3 (207-291)||(54547906-54547988)
chr3 (32-72)||(49002620-49002660)
[»] chr8 (9 HSPs)
chr8 (132-292)||(18896456-18896624)
chr8 (35-131)||(18896657-18896753)
chr8 (21-131)||(30491556-30491665)
chr8 (121-295)||(30491686-30491867)
chr8 (121-289)||(4830219-4830394)
chr8 (180-224)||(35795505-35795549)
chr8 (236-295)||(18896754-18896813)
chr8 (127-293)||(11873541-11873713)
chr8 (52-126)||(11873745-11873819)
[»] chr7 (14 HSPs)
chr7 (135-295)||(41415666-41415834)
chr7 (206-295)||(2407352-2407440)
chr7 (212-295)||(40352665-40352747)
chr7 (31-126)||(2407420-2407516)
chr7 (31-125)||(34111036-34111130)
chr7 (209-291)||(7875714-7875795)
chr7 (206-291)||(1780496-1780580)
chr7 (179-289)||(39706765-39706874)
chr7 (132-294)||(34111507-34111675)
chr7 (179-295)||(34110968-34111083)
chr7 (31-98)||(39706826-39706894)
chr7 (56-124)||(40352758-40352826)
chr7 (31-95)||(41415735-41415799)
chr7 (135-175)||(2407556-2407596)
[»] chr6 (12 HSPs)
chr6 (192-295)||(8382098-8382201)
chr6 (57-131)||(24840671-24840745)
chr6 (209-289)||(11171329-11171407)
chr6 (31-130)||(1436111-1436209)
chr6 (32-130)||(2696710-2696809)
chr6 (74-124)||(11171433-11171483)
chr6 (115-175)||(2704723-2704783)
chr6 (54-130)||(2704799-2704875)
chr6 (132-168)||(8382294-8382330)
chr6 (192-295)||(2696775-2696880)
chr6 (31-101)||(8382166-8382237)
chr6 (209-293)||(1436046-1436128)
[»] chr5 (7 HSPs)
chr5 (206-294)||(17483190-17483278)
chr5 (179-295)||(5003521-5003637)
chr5 (31-131)||(5003589-5003690)
chr5 (179-295)||(16185212-16185328)
chr5 (211-295)||(16645001-16645084)
chr5 (121-168)||(5003711-5003759)
chr5 (192-294)||(17483449-17483550)
[»] scaffold0007 (3 HSPs)
scaffold0007 (121-295)||(201522-201703)
scaffold0007 (179-295)||(201333-201448)
scaffold0007 (47-131)||(201417-201501)
[»] scaffold0267 (2 HSPs)
scaffold0267 (31-134)||(12627-12731)
scaffold0267 (132-259)||(12760-12895)
[»] chr2 (5 HSPs)
chr2 (135-295)||(43519328-43519494)
chr2 (33-134)||(43519194-43519296)
chr2 (223-295)||(38258747-38258820)
chr2 (195-295)||(43519124-43519224)
chr2 (31-96)||(43519362-43519427)
[»] scaffold0010 (1 HSPs)
scaffold0010 (207-295)||(122439-122526)
[»] scaffold0734 (1 HSPs)
scaffold0734 (229-295)||(1910-1975)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 39239092 - 39238816
Alignment:
Q  20 taagtttccatccttttgcatttttggcccc-tagaccaattttgactaggtcagtgcatacgtgacacccatatcactttatacattaggcttaattgc 118  Q
    ||||||| ||||||||||||||||||||||| || |||| |||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  39239092 taagtttacatccttttgcatttttggccccctatacca-ttttgattaggtcaatgcatacgtgacacccatatcactttattcattaggcttaattgc 39238994  T
Q  119 agttttggcccccaagaaaatagaaagtcgcacgtggcacctcactttaaatgatgtaggatgcattggctttgtcaaaattggta-tgggggccaaaag 217  Q
    | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| |||||||||||||| ||  ||||||||||||    
T  39238993 aattttggcccccaagaaaatagaaagtcacacgtggcacctcactttaaatgatgtggaatgcattgactttgtcaaaattgatacggggggccaaaag 39238894  T
Q  218 tgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtgatact 295  Q
    | ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39238893 tataaaagggagtaaacttaggggacttatttgttattgtttatttataagggatcaaaatcgcaagattgtgatact 39238816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 179 - 295
Target Start/End: Complemental strand, 4460309 - 4460193
Alignment:
Q  179 atgcattggctttgtcaaaattggtatggg-ggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaa 277  Q
    |||||||| | | |||||||||||| |||| ||||||||||| ||||||| ||||||||||||||||||||||||||| ||| |||||| |||  |||||    
T  4460309 atgcattgacctagtcaaaattggtctgggaggccaaaagtgcaaaagggggtaaacttaggggactgatttgttattattt-tttatagggggtcaaaa 4460211  T
Q  278 tcgcaagattgtgatact 295  Q
    || |||||||||||||||    
T  4460210 tcacaagattgtgatact 4460193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 295
Target Start/End: Original strand, 4460402 - 4460561
Alignment:
Q  143 aagtcgcacgtggcacctcactttaaatgatgtagg--------atgcattggctttgtcaaaattggtatggg-ggccaaaagtgtaaaagggagtaaa 233  Q
    ||||| |||||||||||||||||||| |||||| ||        |||||||| ||| ||||||||||||  ||  ||||||||||  |||| ||  ||||    
T  4460402 aagtcacacgtggcacctcactttaagtgatgtgggtgtcacgtatgcattgacttggtcaaaattggtccggaaggccaaaagtccaaaaagggttaaa 4460501  T
Q  234 cttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtgatact 295  Q
     ||| ||| |||||||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  4460502 tttaaggggctgatttgttattgttt--ttataggggaccaaaatcgcaagattgtgatact 4460561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 207 - 291
Target Start/End: Original strand, 51355989 - 51356072
Alignment:
Q  207 ggggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtga 291  Q
    ||||| ||||||| ||||||| ||||||||| ||| |||| |||||||||||| |||||| ||| ||||||||||||||||||||    
T  51355989 ggggctaaaagtgcaaaagggggtaaacttaaggg-ctgacttgttattgtttttttatagggggccaaaatcgcaagattgtga 51356072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 30728614 - 30728572
Alignment:
Q  132 aagaaaatagaaagtcgcacgtggcacctcactttaaatgatg 174  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  30728614 aagaaaatagaaagtcacacgtggcacctcactttaaatgatg 30728572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 291
Target Start/End: Complemental strand, 51355913 - 51355819
Alignment:
Q  196 aaattggtatgggggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtga 291  Q
    |||||||| | ||||||||||||| |||| || ||||||||| ||| ||||||||||||||||| |||||  ||| | ||| || |||||||||||    
T  51355913 aaattggtctaggggccaaaagtgcaaaaaggggtaaacttaaggg-ctgatttgttattgtttttttatggggggcaaaattcacaagattgtga 51355819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 282
Target Start/End: Complemental strand, 2210506 - 2210434
Alignment:
Q  208 gggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgca 282  Q
    ||||||||||||  |||||| ||||||||| ||| || |||||||||||||| |||||||||| |||||||||||    
T  2210506 gggccaaaagtgctaaagggggtaaacttaaggggctaatttgttattgttt-tttataaggg-ccaaaatcgca 2210434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 8131833 - 8131763
Alignment:
Q  32 cttttgcatttttggcccctagaccaattttgactaggtcagtg-catacgtgacacccatatcactttat 101  Q
    |||||||| ||||| |||||| | ||||||||| | ||||| || ||||||||||||||||||||||||||    
T  8131833 cttttgcacttttgacccctaaatcaattttgattgggtcaatgtcatacgtgacacccatatcactttat 8131763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 30728565 - 30728499
Alignment:
Q  230 taaacttaggggactgatttgttattg-tttatttataagggaccaaaatcgcaagattgtgatact 295  Q
    |||||||| |||||||||||||||||| ||| ||||||  ||| |||||| ||||||||||||||||    
T  30728565 taaacttaagggactgatttgttattgttttttttatagaggatcaaaattgcaagattgtgatact 30728499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 295
Target Start/End: Original strand, 39239061 - 39239147
Alignment:
Q  206 gggggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtgatact 295  Q
    ||||||||||| || ||||||  |||||||||||||  |||||||||||||||| |||||| |||   |||||||||||||||| |||||    
T  39239061 gggggccaaaaatgcaaaaggatgtaaacttagggggttgatttgttattgttt-tttatagggg--taaaatcgcaagattgtaatact 39239147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 8131700 - 8131654
Alignment:
Q  132 aagaaaatagaaagtcgcacgtggcacctcactttaaatgatgtagg 178  Q
    |||||||||||| ||| || ||||||||||||||||| |||||||||    
T  8131700 aagaaaatagaatgtcacatgtggcacctcactttaagtgatgtagg 8131654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 4460261 - 4460310
Alignment:
Q  31 ccttttgcatttttggcc-cctagaccaattttgactaggtcagtgcata 79  Q
    ||||||||| |||||||| || ||||||||||||||||||||| ||||||    
T  4460261 ccttttgcacttttggcctcccagaccaattttgactaggtcaatgcata 4460310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 4460471 - 4460426
Alignment:
Q  53 gaccaattttgactaggtcagtgcatacgtgacacccatatcactt 98  Q
    ||||||||||||| | |||| ||||||||||||||||| |||||||    
T  4460471 gaccaattttgaccaagtcaatgcatacgtgacacccacatcactt 4460426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 33641991 - 33641955
Alignment:
Q  180 tgcattggctttgtcaaaattggtatgggggccaaaa 216  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  33641991 tgcattgactttgtcaaaattggtctgggggccaaaa 33641955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 31 - 168
Target Start/End: Complemental strand, 35820072 - 35819933
Alignment:
Q  31 ccttttgcatttttggcc-cctagaccaattttgactaggtcagtgcatacgtgacacccatatcactttatacattaggcttaattgcagttttggccc 129  Q
    ||||||||| |||||||| ||  |||||||||||||| ||||| |||||||||| |||||| ||||||||||  |||| |||||||||||||||||||||    
T  35820072 ccttttgcacttttggcctcccggaccaattttgactgggtcaatgcatacgtggcacccaaatcactttatttattacgcttaattgcagttttggccc 35819973  T
Q  130 cc-aagaaaatagaaagtcgcacgtggcacctcactttaa 168  Q
    || |||||||||||||||| ||||||||||||||||||||    
T  35819972 cctaagaaaatagaaagtcacacgtggcacctcactttaa 35819933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 192 - 295
Target Start/End: Original strand, 35820037 - 35820140
Alignment:
Q  192 gtcaaaattggtatggg-ggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtg 290  Q
    ||||||||||||  ||| ||||||||||| ||||||| ||||||||||||| ||||||||||||| ||| |||||| ||| |||||||||||||||||||    
T  35820037 gtcaaaattggtccgggaggccaaaagtgcaaaaggg-gtaaacttagggggctgatttgttattatttttttatagggggccaaaatcgcaagattgtg 35820135  T
Q  291 atact 295  Q
    |||||    
T  35820136 atact 35820140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 131
Target Start/End: Complemental strand, 25721322 - 25721247
Alignment:
Q  56 caattttgactaggtcagtgcatacgtgacacccatatcactttatacattaggcttaattgcagttttggccccc 131  Q
    ||||||||||| | ||| ||||||||||||||||||||||||||||  |||||| ||||||| | |||||||||||    
T  25721322 caattttgactggatcaatgcatacgtgacacccatatcactttatttattaggtttaattgtaattttggccccc 25721247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 33096143 - 33096221
Alignment:
Q  53 gaccaattttgactaggtcagtgcatacgtgacacccatatcactttatacattaggcttaattgcagttttggccccc 131  Q
    |||||||||||| | ||||| | |||||||| |||||||||||||||||  ||||| |||||||| |||||||||||||    
T  33096143 gaccaattttgattgggtcaatccatacgtggcacccatatcactttatttattagacttaattgtagttttggccccc 33096221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 123
Target Start/End: Original strand, 26308651 - 26308742
Alignment:
Q  33 ttttgcatttttggcccc-tagaccaattttgactaggtcagtgcatacgtgacacccatatcactttatacattaggcttaattgcagttt 123  Q
    |||| ||||||||||| | ||| | ||||||||||| |||| ||||| |||| |||||||||||||||||  |||| |||||||||||||||    
T  26308651 ttttacatttttggcctcgtagccaaattttgactaagtcaatgcatgcgtggcacccatatcactttatttattatgcttaattgcagttt 26308742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 295
Target Start/End: Complemental strand, 23395255 - 23395139
Alignment:
Q  179 atgcattggctttgtcaaaattggtatggggg-ccaaaagtgtaaaagggagtaaacttagggga-ctgatttgttattgtttatttataagggaccaaa 276  Q
    |||||||| |||||||||||||| | | | || ||||||||| ||||| | |||||||||||||  ||||||||||||||||| || ||| ||| | |||    
T  23395255 atgcattgactttgtcaaaattgatctagaggaccaaaagtgcaaaagtgggtaaacttaggggggctgatttgttattgtttctt-ataggggtc-aaa 23395158  T
Q  277 atcgcaagattgtgatact 295  Q
    |||||||||||||||||||    
T  23395157 atcgcaagattgtgatact 23395139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 293
Target Start/End: Complemental strand, 33096139 - 33096054
Alignment:
Q  207 ggggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtgata 293  Q
    ||||| ||| ||| |||| || ||||||||| | | ||||||||||||| ||| |||||||||||||||||| ||||||||| ||||    
T  33096139 ggggcaaaaggtgaaaaatggggtaaacttaagaggctgatttgttattattt-tttataagggaccaaaattgcaagattgcgata 33096054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 7323373 - 7323285
Alignment:
Q  209 ggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattg-tttatttata-agggaccaaaatcgcaagattgtgatact 295  Q
    ||||||||||| ||||  | ||||||||||| | ||||||| |||||| ||| |||||| |||| |||||||||||| |||||||||||    
T  7323373 ggccaaaagtgcaaaatagggtaaacttaggaggctgatttattattgttttttttatagaggggccaaaatcgcaaaattgtgatact 7323285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 26308785 - 26308825
Alignment:
Q  135 aaaatagaaagtcgcacgtggcacctcactttaaatgatgt 175  Q
    ||||||||||||||||||||||| |||||||||| ||||||    
T  26308785 aaaatagaaagtcgcacgtggcatctcactttaagtgatgt 26308825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 47 - 291
Target Start/End: Original strand, 23564234 - 23564487
Alignment:
Q  47 cccctagaccaattttgactaggtcagtgcatacgtgacacccatatcactttatacattaggcttaattgcagttttggccccc-aagaaaatagaaag 145  Q
    |||| ||||||||||||||| ||||| ||||||| || ||||||||||| ||||   |||||||||||||||||||||| ||||| ||||||| ||||||    
T  23564234 cccccagaccaattttgactgggtcaatgcatacatggcacccatatcattttaattattaggcttaattgcagttttgaccccctaagaaaaaagaaag 23564333  T
Q  146 tcgcacgtggcacctcactttaaatgatgtagg--------atgcattggctttgtcaaaattggtat-gggggccaaaagtgtaaaagggagtaaactt 236  Q
    |  |||||||||| ||||||||| |||||| ||        ||||||||  ||  ||||||||||||| |||||| | ||||| |||| || ||||||||    
T  23564334 ttacacgtggcacgtcactttaagtgatgtgggtgccacgcatgcattgatttaatcaaaattggtatggggggctagaagtgcaaaatggggtaaactt 23564433  T
Q  237 aggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtga 291  Q
    ||| |  |||||||||| ||||| ||||||||||   ||||||||||||||||||    
T  23564434 aggaggttgatttgttagtgttt-tttataaggggttaaaatcgcaagattgtga 23564487  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 295
Target Start/End: Complemental strand, 23564252 - 23564148
Alignment:
Q  192 gtcaaaattggtatggggg-ccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtg 290  Q
    |||||||||||| |||||| |||||||||||||| || |||||||||  || || |||||||||||||| |||||| | | |||||||||||||||||||    
T  23564252 gtcaaaattggtctggggggccaaaagtgtaaaaaggggtaaacttaatgggctaatttgttattgtttttttataggaggccaaaatcgcaagattgtg 23564153  T
Q  291 atact 295  Q
    |||||    
T  23564152 atact 23564148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 115 - 295
Target Start/End: Complemental strand, 11413459 - 11413273
Alignment:
Q  115 ttgcagttttggccccc-aagaaaatagaaagtcgcacgtggcacctcactttaaatgatgtagg--------atgcattggctttgtcaaaattggtat 205  Q
    ||||| ||||||||||| ||||||||||||||||  | ||||||||||||||||| |||||| ||        |||||||| ||| |||||||||| | |    
T  11413459 ttgcaattttggccccctaagaaaatagaaagtcatatgtggcacctcactttaagtgatgtgggttccacgtatgcattgacttggtcaaaattgatct 11413360  T
Q  206 gggggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtgatact 295  Q
    | ||||||||| || ||||||  ||||||||| ||| |||||||| |||||||| |||| | ||||  ||||||||||||||||||||||    
T  11413359 gagggccaaaactgcaaaaggt-gtaaacttaaggggctgatttgatattgttt-tttaaatgggaa-aaaatcgcaagattgtgatact 11413273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 295
Target Start/End: Complemental strand, 52418064 - 52417893
Alignment:
Q  132 aagaaaatagaaagtcgcacgtggcacctcactttaaatgatgtagg--------atgcattggctttgtcaaaattggtatggg-ggccaaaagtgtaa 222  Q
    |||||||||| ||||| |||||||||||||||||||| ||||||  |        ||||| |  ||| |||||||||||| |||| ||||||||||| ||    
T  52418064 aagaaaataggaagtcacacgtggcacctcactttaagtgatgtgagtgccacatatgcactaacttagtcaaaattggtttgggaggccaaaagtgcaa 52417965  T
Q  223 aagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtgatact 295  Q
    ||||| | ||||||| ||| ||||||||||||||||| |||||  | |||||||||| |||| ||||||||||    
T  52417964 aagggggaaaacttacggggctgatttgttattgttt-tttattggagaccaaaatcacaaggttgtgatact 52417893  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 295
Target Start/End: Original strand, 29070030 - 29070210
Alignment:
Q  115 ttgcagttttggcccccaagaaaatagaaagtcgcacgtggcacctcactttaaatgatgtagg--------atgcattggctttgtcaaaattggtatg 206  Q
    ||||| ||||||||||| | ||||||||||||| |||||||||||||||||||| |||||| ||        |||||||| ||| || ||||||||| |     
T  29070030 ttgcaattttggccccctaaaaaatagaaagtcacacgtggcacctcactttaagtgatgtgggtgccacatatgcattgacttggttaaaattggtct- 29070128  T
Q  207 ggggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtgatact 295  Q
    ||| ||||||||| ||||||| ||||||||| |     || |||||||||||| |||||  ||| ||||||| |||||||||| |||||    
T  29070129 gggaccaaaagtgcaaaagggggtaaacttaag-----gacttgttattgtttttttat--ggggccaaaattgcaagattgtaatact 29070210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 291
Target Start/End: Complemental strand, 30889182 - 30889102
Alignment:
Q  209 ggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtga 291  Q
    ||||||||||| |||| ||||||||||||| || ||||||||||||||||| |||||| ||| |||||||||||||| |||||    
T  30889182 ggccaaaagtgcaaaatggagtaaacttagagg-ctgatttgttattgttt-tttatagggggccaaaatcgcaagactgtga 30889102  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 179 - 295
Target Start/End: Complemental strand, 6588055 - 6587943
Alignment:
Q  179 atgcattggctttgtcaaaattggtatgggggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaat 278  Q
    |||||||  ||| |||||||||||| | ||| ||||||||| ||||||| ||||||||| ||| ||||||||||||||||  |||||| ||| | |||||    
T  6588055 atgcattaacttggtcaaaattggtcttggg-ccaaaagtgcaaaagggggtaaacttatggg-ctgatttgttattgtt--tttatagggggcgaaaat 6587960  T
Q  279 cgcaagattgtgatact 295  Q
     ||||||||||||||||    
T  6587959 tgcaagattgtgatact 6587943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 179 - 295
Target Start/End: Original strand, 36618855 - 36618968
Alignment:
Q  179 atgcattggctttgtcaaaattggtatgggggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaat 278  Q
    |||||||| ||| |||||||||||| ||||| ||||||||| || |||| ||||||||| | |||| |||||||||||||  |||||| |||  ||||||    
T  36618855 atgcattgacttggtcaaaattggtctgggg-ccaaaagtgcaacagggggtaaacttaagagactcatttgttattgtt--tttatagggggtcaaaat 36618951  T
Q  279 cgcaagattgtgatact 295  Q
    | ||||||| |||||||    
T  36618952 cacaagattatgatact 36618968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 134
Target Start/End: Original strand, 3837121 - 3837225
Alignment:
Q  31 ccttttgcatttttggccc-ctagaccaattttgactaggtcagtgcatacgtgacacccatatcactttatacattaggcttaattgcagttttggccc 129  Q
    ||||||||| ||||||||| | |||||| ||||||||||| || |||||| ||| |||  | ||||||||||  ||||| ||| ||||||||||||||||    
T  3837121 ccttttgcacttttggccctccagaccatttttgactaggacaatgcatatgtggcacttagatcactttatttattagacttgattgcagttttggccc 3837220  T
Q  130 ccaag 134  Q
    |||||    
T  3837221 ccaag 3837225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 293
Target Start/End: Complemental strand, 29069932 - 29069845
Alignment:
Q  206 gggggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtgata 293  Q
    ||||| |||||||| ||||| |  ||||||||| ||||| |||||||||||||| |||||| |||  |||||||| ||||||||||||    
T  29069932 gggggtcaaaagtgcaaaagaggataaacttagtggactaatttgttattgtttttttatagggggtcaaaatcgtaagattgtgata 29069845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 259
Target Start/End: Original strand, 3837254 - 3837388
Alignment:
Q  132 aagaaaatagaaagtcgcacgtggcacctcactttaaatgatgtagg--------atgcattggctttgtcaaaattggtatgggggccaaaagtgtaaa 223  Q
    |||||||||||||||| ||||| |||||||||||||| |||||| ||        |||||||| ||| ||||||| || | ||  ||||||||||| |||    
T  3837254 aagaaaatagaaagtcacacgtagcacctcactttaagtgatgtgggtgccacatatgcattgacttggtcaaaactgatctgcaggccaaaagtgcaaa 3837353  T
Q  224 agggagtaaacttaggggactgatttgttattgttt 259  Q
    |||| ||||| ||| ||| |||||||||||||||||    
T  3837354 aggg-gtaaatttaaggggctgatttgttattgttt 3837388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 11413549 - 11413476
Alignment:
Q  56 caattttgactaggtcagtgcatacgtgacacccatatcactttatacattaggcttaattgcagttttggccc 129  Q
    ||||||||| | ||||| ||||||  || |||||||||||||||||  ||||||||||||||||||||| ||||    
T  11413549 caattttgaatgggtcaatgcatatatggcacccatatcactttatttattaggcttaattgcagttttagccc 11413476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 30889346 - 30889445
Alignment:
Q  194 caaaattggtatgggggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattg-tttatttataagggaccaaaatcgcaagattgtgat 292  Q
    |||||||||||||||| | ||||||| ||||  | ||||||||||||| |||||||||||||| ||| |||||| ||| ||| |||| ||||||||||||    
T  30889346 caaaattggtatggggac-aaaagtgcaaaatag-gtaaacttagggggctgatttgttattgttttttttatagggggccagaatcacaagattgtgat 30889443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 295
Target Start/End: Original strand, 47255507 - 47255607
Alignment:
Q  195 aaaattggtatggg-ggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtgata 293  Q
    ||||||| |||||| ||||||||||| ||||| | |||||||||| || ||||||||||||| ||| |||| | ||||| ||||| |||||||| |||||    
T  47255507 aaaattgatatgggaggccaaaagtgcaaaagagggtaaacttagagggctgatttgttattattt-tttaaaggggactaaaattgcaagattatgata 47255605  T
Q  294 ct 295  Q
    ||    
T  47255606 ct 47255607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 295
Target Start/End: Complemental strand, 49262089 - 49261980
Alignment:
Q  183 attggctttgtcaaaattggtatgggggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgca 282  Q
    |||| ||| |||||||||||| ||||  | ||||||||||||| | ||||||||||| |  |||||| ||||| |||  ||||| ||| |||||||||||    
T  49262089 attgacttagtcaaaattggtctgggatc-aaaagtgtaaaagagggtaaacttaggaggttgatttattattattt--ttatagggggccaaaatcgca 49261993  T
Q  283 agattgtgatact 295  Q
    |||||||||||||    
T  49261992 agattgtgatact 49261980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 295
Target Start/End: Original strand, 36859733 - 36859820
Alignment:
Q  207 ggggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtgatact 295  Q
    |||| |||||||||||||| | ||||||||| ||| |||||| |||||||||| ||||||  || ||||||||||||| | ||||||||    
T  36859733 ggggtcaaaagtgtaaaagagggtaaacttatggggctgattagttattgttt-tttatagagggccaaaatcgcaagttcgtgatact 36859820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 126
Target Start/End: Original strand, 36618693 - 36618763
Alignment:
Q  56 caattttgactaggtcagtgcatacgtgacacccatatcactttatacattaggcttaattgcagttttgg 126  Q
    ||||||||||| ||||| |  ||||||| |||||||||||||||||  |||||| ||||||||| ||||||    
T  36618693 caattttgactgggtcaatatatacgtggcacccatatcactttatttattaggtttaattgcaattttgg 36618763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 52418199 - 52418131
Alignment:
Q  57 aattttgactaggtcagtgcatacgtgacacccatatcactttatacattaggcttaattgcagttttg 125  Q
    |||||||||| | ||| ||| ||| ||||||||||||||||||||  ||| ||||||||| ||||||||    
T  52418199 aattttgactggatcaatgcttacatgacacccatatcactttatttattcggcttaattccagttttg 52418131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 36618897 - 36618835
Alignment:
Q  35 ttgcatttttggcccctagaccaattttgactaggtcagtgcatacgtgacacccatatcactt 98  Q
    ||||| |||||||||| |||||||||||||| | |||| ||||||| ||||||||| |||||||    
T  36618897 ttgcacttttggcccc-agaccaattttgaccaagtcaatgcatacatgacacccacatcactt 36618835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 21355720 - 21355647
Alignment:
Q  52 agaccaattttgactaggtcagtgcatacgtgacacccatatcactttatacattaggcttaattgcagttttg 125  Q
    |||||||||||||  | |||| |||||| ||| |||||| |||||||||   ||||| ||||||||||||||||    
T  21355720 agaccaattttgatcaagtcaatgcatatgtggcacccacatcactttacttattagacttaattgcagttttg 21355647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 54547988 - 54547906
Alignment:
Q  207 ggggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtga 291  Q
    |||| |||||||||||||    ||||||||| | ||||||||||||||||||  |||||| |||  |||||||||| ||||||||    
T  54547988 ggggtcaaaagtgtaaaatatggtaaacttaagagactgatttgttattgtt--tttatagggggtcaaaatcgcacgattgtga 54547906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 49002660 - 49002620
Alignment:
Q  32 cttttgcatttttggcccctagaccaattttgactaggtca 72  Q
    |||| ||| |||||||||||||||||||||||||| |||||    
T  49002660 ctttggcagttttggcccctagaccaattttgactcggtca 49002620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 132 - 292
Target Start/End: Complemental strand, 18896624 - 18896456
Alignment:
Q  132 aagaaaatagaaagtcgcacgtggcacctcactttaaatgatgtagg--------atgcattggctttgtcaaaattggtatggggg-ccaaaagtgtaa 222  Q
    |||||||||||||||| |||||||||||||||||||| |||||| ||        |||||||| ||| |||||||||||| || ||| ||||||||| ||    
T  18896624 aagaaaatagaaagtcacacgtggcacctcactttaagtgatgtgggtgccacacatgcattgacttggtcaaaattggtctgagggaccaaaagtgcaa 18896525  T
Q  223 aagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtgat 292  Q
    |||||  |||||||||||| ||||||| ||||||||| |||||| |||||||||||||||||||||||||    
T  18896524 aaggggataaacttagggggctgatttattattgttt-tttataggggaccaaaatcgcaagattgtgat 18896456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 35 - 131
Target Start/End: Complemental strand, 18896753 - 18896657
Alignment:
Q  35 ttgcatttttggcccctagaccaattttgactaggtcagtgcatacgtgacacccatatcactttatacattaggcttaattgcagttttggccccc 131  Q
    ||||| ||||||||||  |||||||||||||||||||| |||||||||| |||| ||||||||||||  ||||||||| ||||||||||||||||||    
T  18896753 ttgcacttttggccccctgaccaattttgactaggtcaatgcatacgtggcacctatatcactttatttattaggcttgattgcagttttggccccc 18896657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 30491556 - 30491665
Alignment:
Q  21 aagtttccatccttttgcatttttggcccctagaccaattttgactaggtcagtgcatacgtgacacccatatcactttatacattaggcttaattgcag 120  Q
    |||||| || ||||||||| |||||||||| ||||||||||||| | ||||| | |||||||  |||||||||||||||||  ||||| ||||||| ||     
T  30491556 aagtttacacccttttgcacttttggcccc-agaccaattttgattgggtcaattcatacgttgcacccatatcactttatttattagacttaattacat 30491654  T
Q  121 ttttggccccc 131  Q
    ||||| |||||    
T  30491655 ttttgaccccc 30491665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 295
Target Start/End: Original strand, 30491686 - 30491867
Alignment:
Q  121 ttttggccccc-aagaaaatagaaagtcgcacgtggcacctcactttaaatgatgtagg--------atgcattggctttgtcaaaattggtatgggggc 211  Q
    ||||||||||| ||||| |||||||||| |||||||||| ||||||||| |||||| ||        |||||||| |||  ||||||||  | | |||||    
T  30491686 ttttggccccctaagaatatagaaagtcacacgtggcacatcactttaagtgatgtgggtgccatgtatgcattgacttgatcaaaattaat-taggggc 30491784  T
Q  212 caaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtgatact 295  Q
    |||||||| ||||| |  ||||||||| ||  |||||||||||||||| ||||||  ||  ||||||||||||||| |||||||    
T  30491785 caaaagtgcaaaagtggataaacttagagggttgatttgttattgttt-tttatagagggtcaaaatcgcaagattatgatact 30491867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 289
Target Start/End: Complemental strand, 4830394 - 4830219
Alignment:
Q  121 ttttggcccccaag-aaaatagaaagtcgcacgtggcacctcactttaaatgatgtagg--------atgcattggctttgtcaaaattggtatgggggc 211  Q
    ||||||||||| || ||||||||||||| |||||| |||||||||||||||||||| ||        |||||||| ||| ||||||||||   ||||||     
T  4830394 ttttggccccctaggaaaatagaaagtcacacgtgccacctcactttaaatgatgtgggtgcaacatatgcattgacttggtcaaaattgtgttggggga 4830295  T
Q  212 caaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgt 289  Q
    |||||||| ||||| | ||||||||| ||   |||||||| ||||||| |||||| |||  ||||| | |||||||||    
T  4830294 caaaagtgcaaaagag-gtaaacttaaggtgttgatttgtaattgttt-tttatagggggtcaaaaacccaagattgt 4830219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 35795505 - 35795549
Alignment:
Q  180 tgcattggctttgtcaaaattggtatgggggccaaaagtgtaaaa 224  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||    
T  35795505 tgcattgactttgtcaaaattggtatgggggccaaaactgtaaaa 35795549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 18896754 - 18896813
Alignment:
Q  236 taggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtgatact 295  Q
    |||||| ||||||||||||||||| |||||| | | |||||||| |||||||||||||||    
T  18896754 tagggggctgatttgttattgtttttttataggaggccaaaatcacaagattgtgatact 18896813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 293
Target Start/End: Complemental strand, 11873713 - 11873541
Alignment:
Q  127 cccccaagaaaatagaaagtcgcacgtggcacctcactttaaatgatgtagg--------atgcattggctttgtcaaaattggtatggggg-ccaaaag 217  Q
    |||| ||||||||| |||||| |||||||||||||| ||||| |||||| ||        || |||||  || |||||||||||| |||||| || ||||    
T  11873713 cccctaagaaaatataaagtcacacgtggcacctcattttaagtgatgtgggtgtcacgtatacattgatttggtcaaaattggtctgggggaccgaaag 11873614  T
Q  218 tgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtgata 293  Q
    || |||| || |||||  || ||| |||||||| |||  ||| |||||||||||  ||||||||||||||||||||    
T  11873613 tgcaaaatggggtaaatatatggg-ctgatttgatat--tttttttataagggataaaaatcgcaagattgtgata 11873541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 11873819 - 11873745
Alignment:
Q  52 agaccaattttgactaggtcagtgcatacgtgacacccatatcactttatacattaggcttaattgcagttttgg 126  Q
    ||||||||||| | ||||||| ||| |||||| |||||| |||| |||||  ||||| ||||||| |||||||||    
T  11873819 agaccaattttaattaggtcaatgcttacgtggcacccagatcattttatttattagacttaattacagttttgg 11873745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 135 - 295
Target Start/End: Complemental strand, 41415834 - 41415666
Alignment:
Q  135 aaaatagaaagtcgcacgtggcacctcactttaaatgatgtagg--------atgcattggctttgtcaaaattggtatgggggccaaaagtgtaaaagg 226  Q
    ||||||||||||| ||| ||||||||||||||||||||||| ||        |||||||| ||| |||||||||| | || |||||||||||| ||||||    
T  41415834 aaaatagaaagtcacacatggcacctcactttaaatgatgtgggtgccacgtatgcattgacttagtcaaaattgatctgtgggccaaaagtgcaaaagg 41415735  T
Q  227 gagtaaactt-aggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtgatact 295  Q
    | |||||||| | ||| || |||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  41415734 gggtaaactttaaggggctaatttgttattgttt-tttataaggggccaaaatcgcaagattgtgatact 41415666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 206 - 295
Target Start/End: Complemental strand, 2407440 - 2407352
Alignment:
Q  206 gggggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtgatact 295  Q
    |||||||||||||| ||||||| ||||||||||| | ||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  2407440 gggggccaaaagtgcaaaagggggtaaacttaggtggctgatttgttattgttt-tttataggggaccaaaatcgcaagattgtgatact 2407352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 212 - 295
Target Start/End: Complemental strand, 40352747 - 40352665
Alignment:
Q  212 caaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtgatact 295  Q
    ||||||||||||| || ||||||||| ||| ||||||||||||||||| |||||| | ||||||||||||||||||||||||||    
T  40352747 caaaagtgtaaaaaggggtaaacttatggggctgatttgttattgttt-tttataggcgaccaaaatcgcaagattgtgatact 40352665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 2407420 - 2407516
Alignment:
Q  31 ccttttgcatttttggcccc-tagaccaattttgactaggtcagtgcatacgtgacacccatatcactttatacattaggcttaattgcagttttgg 126  Q
    ||||||||| |||||||||| | |||||||||||||||||||| |||||||||| | |||| ||||| ||||  |||||| ||||||||||||||||    
T  2407420 ccttttgcacttttggccccctggaccaattttgactaggtcaatgcatacgtggcgcccaaatcaccttatttattaggtttaattgcagttttgg 2407516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 34111036 - 34111130
Alignment:
Q  31 ccttttgcatttttggcccctagaccaattttgactaggtcagtgcatacgtgacacccatatcactttatacattaggcttaattgcagttttg 125  Q
    |||||||||||||| |||| | |||||||||||||||||||| |||||| ||  |||| | ||| ||||||  ||||||||||||||||||||||    
T  34111036 ccttttgcatttttagcccatggaccaattttgactaggtcaatgcatatgtagcacctaaatccctttatttattaggcttaattgcagttttg 34111130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 291
Target Start/End: Complemental strand, 7875795 - 7875714
Alignment:
Q  209 ggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtga 291  Q
    ||||||||||| ||||  | ||||||||| | | ||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  7875795 ggccaaaagtgcaaaaatgggtaaacttaagaggctgatttgttattgttt-tttataggggaccaaaatcgcaagattgtga 7875714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 291
Target Start/End: Original strand, 1780496 - 1780580
Alignment:
Q  206 gggggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtga 291  Q
    ||||| |||||||| ||||||| || |||||| ||| ||||||||||||||||| |||||| | | ||||||||||||||||||||    
T  1780496 gggggacaaaagtgaaaaagggggtgaacttaaggggctgatttgttattgttt-tttataggaggccaaaatcgcaagattgtga 1780580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 289
Target Start/End: Complemental strand, 39706874 - 39706765
Alignment:
Q  179 atgcattggctttgtcaaaattggtatg-ggggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaa 277  Q
    |||||||| |||||||||||||||| || ||||| |||| |||||||||| ||||||||| ||||||||||| ||| ||||| |||| | |||| |||||    
T  39706874 atgcattgactttgtcaaaattggtctgaggggcaaaaaatgtaaaaggg-gtaaacttaagggactgatttattactgtttttttacagggga-caaaa 39706777  T
Q  278 tcgcaagattgt 289  Q
    || ||| |||||    
T  39706776 tcacaaaattgt 39706765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 294
Target Start/End: Original strand, 34111507 - 34111675
Alignment:
Q  132 aagaaaatagaaagtcgcacgtggcacctcactttaaatgatgtagg--------atgcattggctttgtcaaaattggtatgggggccaaaagtgtaaa 223  Q
    |||||||||||||||| | |||| ||||||||||||| ||||||  |        || ||||| ||| |||||||||||| ||||  |||||||||||||    
T  34111507 aagaaaatagaaagtcacccgtgacacctcactttaagtgatgtgtgtgccacatattcattgacttggtcaaaattggtgtggga-ccaaaagtgtaaa 34111605  T
Q  224 agggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtgatac 294  Q
    | || ||||||||||  || |||||||| ||||||| ||||||     ||||||||||||| |||||||||    
T  34111606 aaggggtaaacttagatgattgatttgtcattgttt-tttatactcagccaaaatcgcaaggttgtgatac 34111675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 295
Target Start/End: Complemental strand, 34111083 - 34110968
Alignment:
Q  179 atgcattggctttgtcaaaattggtatgggggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaat 278  Q
    |||||||| | | ||||||||||||    |||| |||| || ||||||||||||||||   || || |||||||||||||| |||||| |  | ||||||    
T  34111083 atgcattgacctagtcaaaattggtccatgggctaaaaatgcaaaagggagtaaacttgtagggctaatttgttattgttt-tttataggaaatcaaaat 34110985  T
Q  279 cgcaagattgtgatact 295  Q
    |||||||||||||||||    
T  34110984 cgcaagattgtgatact 34110968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 39706826 - 39706894
Alignment:
Q  31 ccttttgcatttttggcccct-agaccaattttgactaggtcagtgcatacgtgacacccatatcactt 98  Q
    |||||| ||||||| |||||| |||||||||||||| | |||| ||||||||| |||||| ||||||||    
T  39706826 ccttttacattttttgcccctcagaccaattttgacaaagtcaatgcatacgtaacacccgtatcactt 39706894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 40352758 - 40352826
Alignment:
Q  56 caattttgactaggtcagtgcatacgtgacacccatatcactttatacattaggcttaattgcagtttt 124  Q
    ||||||||| | ||||| ||| || ||| |||| ||||||||||||  |||||||||||||||||||||    
T  40352758 caattttgattgggtcaatgcttatgtggcacctatatcactttatttattaggcttaattgcagtttt 40352826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 41415735 - 41415799
Alignment:
Q  31 ccttttgcatttttggcccctagaccaattttgactaggtcagtgcatacgtgacacccatatca 95  Q
    ||||||||| |||||||||  ||| |||||||||||| |||| |||||||||| |||||| ||||    
T  41415735 ccttttgcacttttggcccacagatcaattttgactaagtcaatgcatacgtggcacccacatca 41415799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 2407556 - 2407596
Alignment:
Q  135 aaaatagaaagtcgcacgtggcacctcactttaaatgatgt 175  Q
    ||||||||||||| || ||||||||||||||||| ||||||    
T  2407556 aaaatagaaagtcacatgtggcacctcactttaagtgatgt 2407596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 192 - 295
Target Start/End: Complemental strand, 8382201 - 8382098
Alignment:
Q  192 gtcaaaattggtatggggg-ccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtg 290  Q
    ||||||||||||  ||||| ||||||||| ||||||||||||||||||  ||||||||||||||||||| ||||||||||| |||||| |||||||||||    
T  8382201 gtcaaaattggtccgggggaccaaaagtgcaaaagggagtaaacttagcagactgatttgttattgttt-tttataagggatcaaaattgcaagattgtg 8382103  T
Q  291 atact 295  Q
    |||||    
T  8382102 atact 8382098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 24840745 - 24840671
Alignment:
Q  57 aattttgactaggtcagtgcatacgtgacacccatatcactttatacattaggcttaattgcagttttggccccc 131  Q
    |||||||||||||||| ||| |||||||||| || ||||||||||  ||||||||| |||||||||||| |||||    
T  24840745 aattttgactaggtcaatgcttacgtgacactcaaatcactttatttattaggcttgattgcagttttgaccccc 24840671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 289
Target Start/End: Complemental strand, 11171407 - 11171329
Alignment:
Q  209 ggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgt 289  Q
    ||||||||||| ||||| |  ||||| |||| | ||||||||||||||||| ||||||||||||||||||| |||||||||    
T  11171407 ggccaaaagtgcaaaagaggataaacataggag-ctgatttgttattgttt-tttataagggaccaaaatcccaagattgt 11171329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 1436111 - 1436209
Alignment:
Q  31 ccttttgcatttttggcccctagaccaattttgactaggtcagtgcatacgtgacacccatatcactttatacattaggcttaattgcagttttggcccc 130  Q
    ||||||||| |||||||| | | ||||||||||| | | ||| ||||||||||  ||||||||||| ||||  |||||| ||||||||||||||| ||||    
T  1436111 ccttttgcacttttggcctcaa-accaattttgatttgttcaatgcatacgtggtacccatatcacattatttattaggattaattgcagttttgacccc 1436209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 2696809 - 2696710
Alignment:
Q  32 cttttgcatttttggccc-ctagaccaattttgactaggtcagtgcatacgtgacacccatatcactttatacattaggcttaattgcagttttggcccc 130  Q
    ||||||||||||| |||| | | ||||||||||||| |||   || |||||||||||||||||||||||||  |||||| |||||| || |||| |||||    
T  2696809 cttttgcatttttagccctccaaaccaattttgactgggttcatgtatacgtgacacccatatcactttatttattaggtttaattacaattttagcccc 2696710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 11171433 - 11171483
Alignment:
Q  74 tgcatacgtgacacccatatcactttatacattaggcttaattgcagtttt 124  Q
    |||||| |||||||||||||||||||||  |||||| ||||||||||||||    
T  11171433 tgcatatgtgacacccatatcactttatttattaggtttaattgcagtttt 11171483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 2704783 - 2704723
Alignment:
Q  115 ttgcagttttggcccccaagaaaatagaaagtcgcacgtggcacctcactttaaatgatgt 175  Q
    ||||| |||| ||||  |||||||||||||||| ||| |||||||||||||||| ||||||    
T  2704783 ttgcaattttagcccttaagaaaatagaaagtcacacatggcacctcactttaagtgatgt 2704723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 2704875 - 2704799
Alignment:
Q  54 accaattttgactaggtcagtgcatacgtgacacccatatcactttatacattaggcttaattgcagttttggcccc 130  Q
    ||||||||||||| ||||| || |||| |||||| || ||||||||||  ||| || ||||||||| ||||||||||    
T  2704875 accaattttgactgggtcaatgtatacttgacacacaaatcactttatttatttggtttaattgcaattttggcccc 2704799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 8382294 - 8382330
Alignment:
Q  132 aagaaaatagaaagtcgcacgtggcacctcactttaa 168  Q
    |||||||||||||||| ||||||||||||||||||||    
T  8382294 aagaaaatagaaagtcacacgtggcacctcactttaa 8382330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 295
Target Start/End: Original strand, 2696775 - 2696880
Alignment:
Q  192 gtcaaaattggtatgg-gggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattg--tttatttataagggaccaaaatcgcaagattg 288  Q
    |||||||||||| ||| |||| |||| || ||||| | |||||||||||||  |||||||||||||  ||| |||||| | |||||| ||||||||| ||    
T  2696775 gtcaaaattggtttggagggctaaaaatgcaaaagagggtaaacttaggggt-tgatttgttattgtttttttttataggagaccaacatcgcaagactg 2696873  T
Q  289 tgatact 295  Q
    |||||||    
T  2696874 tgatact 2696880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 8382166 - 8382237
Alignment:
Q  31 ccttttgcatttttgg-cccctagaccaattttgactaggtcagtgcatacgtgacacccatatcactttat 101  Q
    ||||||||| |||||| ||||  |||||||||||||| ||||| |||||| ||| |||||| ||||||||||    
T  8382166 ccttttgcacttttggtcccccggaccaattttgactgggtcaatgcataagtggcacccaaatcactttat 8382237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 293
Target Start/End: Complemental strand, 1436128 - 1436046
Alignment:
Q  209 ggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtgata 293  Q
    ||||||||||| ||||||| ||||||||||| | || |||||||||| ||| |||||| | |  |||||| ||||||||||||||    
T  1436128 ggccaaaagtgcaaaaggg-gtaaacttaggcggcttatttgttattattt-tttataggaggtcaaaattgcaagattgtgata 1436046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 206 - 294
Target Start/End: Complemental strand, 17483278 - 17483190
Alignment:
Q  206 gggggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtgatac 294  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||  || |||||||| ||||||||||||||    
T  17483278 gggggccaaaagtacaaaagggagtaaacttaggggactgatttgttattgtttttttatagagggccaaaatcacaagattgtgatac 17483190  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 179 - 295
Target Start/End: Complemental strand, 5003637 - 5003521
Alignment:
Q  179 atgcattggctttgtcaaaattggtatggg-ggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaa 277  Q
    |||||||| | | ||||||||||||  ||| ||||||||||| |||||||  ||||||||| ||  |||||||||||||||| ||||||||||| |||||    
T  5003637 atgcattgacctagtcaaaattggtccgggaggccaaaagtgcaaaaggggataaacttagagggttgatttgttattgttt-tttataagggatcaaaa 5003539  T
Q  278 tcgcaagattgtgatact 295  Q
    ||||||||||||||||||    
T  5003538 tcgcaagattgtgatact 5003521  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 5003589 - 5003690
Alignment:
Q  31 ccttttgcatttttggcc-cctagaccaattttgactaggtcagtgcatacgtgacacccatatcactttatacattaggcttaattgcagttttggccc 129  Q
    ||||||||| |||||||| ||  |||||||||||||||||||| |||||| ||| |||| ||||||||||||  |||||||||||||||||| || ||||    
T  5003589 ccttttgcacttttggcctcccggaccaattttgactaggtcaatgcatatgtggcaccgatatcactttatttattaggcttaattgcagtcttagccc 5003688  T
Q  130 cc 131  Q
    ||    
T  5003689 cc 5003690  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 179 - 295
Target Start/End: Complemental strand, 16185328 - 16185212
Alignment:
Q  179 atgcattggctttgtcaaaattggtatgg-gggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaa 277  Q
    |||||| | ||| |||||||||||| ||  |||| ||||||| |||||   ||||||||| ||| ||||||||||||||||| |||||| ||| | ||||    
T  16185328 atgcatcgacttggtcaaaattggtttgaagggcaaaaagtgcaaaagatggtaaacttaaggggctgatttgttattgttt-tttatacggggctaaaa 16185230  T
Q  278 tcgcaagattgtgatact 295  Q
    ||||||||||||||||||    
T  16185229 tcgcaagattgtgatact 16185212  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 295
Target Start/End: Complemental strand, 16645084 - 16645001
Alignment:
Q  211 ccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtgatact 295  Q
    ||||| ||| |||| || ||||||||||||| ||||||||| ||||||| |||||| ||||| |||||||||| |||||||||||    
T  16645084 ccaaacgtgcaaaatggggtaaacttagggggctgatttgtgattgttt-tttataggggactaaaatcgcaaaattgtgatact 16645001  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 5003711 - 5003759
Alignment:
Q  121 ttttggccccc-aagaaaatagaaagtcgcacgtggcacctcactttaa 168  Q
    ||||||||||| || ||||||||||||| ||||||||||||||||||||    
T  5003711 ttttggccccctaaaaaaatagaaagtcacacgtggcacctcactttaa 5003759  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 294
Target Start/End: Original strand, 17483449 - 17483550
Alignment:
Q  192 gtcaaaattggtatgggggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtga 291  Q
    |||||||||||| ||  ||||||||||| |||| |  ||||||||||||| || ||||| |||| ||| |||||| | |  | |||||||||||||||||    
T  17483449 gtcaaaattggtttgaaggccaaaagtgcaaaatgaggtaaacttagggggctaatttggtattattt-tttatatgaggtcgaaatcgcaagattgtga 17483547  T
Q  292 tac 294  Q
    |||    
T  17483548 tac 17483550  T

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Target: scaffold0007 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 121 - 295
Target Start/End: Original strand, 201522 - 201703
Alignment:
Q  121 ttttggccccc-aagaaaatagaaagtcgcacgtggcacctcactttaaatgatgtagg--------atgcattggctttgtcaaaattggtatgggggc 211  Q
    ||||||||||| |||||||||||||||| | | || ||||||||||||| |||||| ||        ||||||||||||  ||||||||||| |||||||    
T  201522 ttttggccccctaagaaaatagaaagtcacgcttgacacctcactttaagtgatgtgggtgccgcgtatgcattggcttgatcaaaattggtctgggggc 201621  T
Q  212 caaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtgatact 295  Q
    |||||||| ||||||| |||||| ||||||  || ||||||||||||  |||||| ||| | ||||||  ||||||||||||||    
T  201622 caaaagtgcaaaagggggtaaacatagggggttggtttgttattgtt--tttatagggggctaaaatcataagattgtgatact 201703  T

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Target: scaffold0007; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 179 - 295
Target Start/End: Complemental strand, 201448 - 201333
Alignment:
Q  179 atgcattggctttgtcaaaattggtatgggggc-caaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaa 277  Q
    |||||| | ||| |||||||||||| ||||||  |||||||| ||||||| ||||||||||||| ||||||| ||||||||| |||| |  ||  |||||    
T  201448 atgcatcgacttggtcaaaattggtctgggggatcaaaagtgaaaaaggg-gtaaacttagggggctgatttattattgttt-tttacagagggtcaaaa 201351  T
Q  278 tcgcaagattgtgatact 295  Q
    ||||||||||||||||||    
T  201350 tcgcaagattgtgatact 201333  T

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Target: scaffold0007; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 201417 - 201501
Alignment:
Q  47 cccctagaccaattttgactaggtcagtgcatacgtgacacccatatcactttatacattaggcttaattgcagttttggccccc 131  Q
    |||| |||||||||||||| | |||  |||||| |||  ||||||||||||||||  |||| |||||||||||||||||||||||    
T  201417 cccccagaccaattttgaccaagtcgatgcataggtggtacccatatcactttatttattatgcttaattgcagttttggccccc 201501  T

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Target: scaffold0267 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 31 - 134
Target Start/End: Original strand, 12627 - 12731
Alignment:
Q  31 ccttttgcatttttggccc-ctagaccaattttgactaggtcagtgcatacgtgacacccatatcactttatacattaggcttaattgcagttttggccc 129  Q
    ||||||||| |||||| || | |||||| ||||||||||| || |||||||||| |||| | ||||||||||  ||||| ||||||||||||||||||||    
T  12627 ccttttgcacttttggtcctccagaccatttttgactaggacaatgcatacgtggcacctagatcactttatttattagacttaattgcagttttggccc 12726  T
Q  130 ccaag 134  Q
    |||||    
T  12727 ccaag 12731  T

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Target: scaffold0267; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 259
Target Start/End: Original strand, 12760 - 12895
Alignment:
Q  132 aagaaaatagaaagtcgcacgtggcacctcactttaaatgatgtagg--------atgcattggctttgtcaaaattggtatgggggccaaaagtgtaaa 223  Q
    |||||||||||||||| ||||| |||||||||||||| |||||| ||        || ||||| ||| ||||||| || | ||  ||||||||||| |||    
T  12760 aagaaaatagaaagtcacacgtagcacctcactttaagtgatgtgggtgccacatatacattgacttggtcaaaactgatctgtaggccaaaagtgcaaa 12859  T
Q  224 agggagtaaacttaggggactgatttgttattgttt 259  Q
    |||| ||||| ||||||| |||||||||||||||||    
T  12860 agggggtaaatttagggggctgatttgttattgttt 12895  T

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Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 135 - 295
Target Start/End: Original strand, 43519328 - 43519494
Alignment:
Q  135 aaaatagaaagtcgcacgtggcacctcactttaaatgatgtagg--------atgcattggctttgtcaaaattggtatgggggccaaaagtgtaaaagg 226  Q
    ||||||||||||| |||||| ||||||||||||  |||||| ||        |||||||| ||| |||||||||||| ||||| ||||||||| ||||||    
T  43519328 aaaatagaaagtcacacgtgtcacctcactttaggtgatgtgggtgccacgtatgcattgacttggtcaaaattggtctggggaccaaaagtgcaaaagg 43519427  T
Q  227 gagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtgatact 295  Q
      ||||||||||||| |||||||||  |||||| ||||||  |   |||| ||||||||||||||||||    
T  43519428 tggtaaacttagggggctgatttgtcgttgtttttttata--gagtcaaagtcgcaagattgtgatact 43519494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 33 - 134
Target Start/End: Original strand, 43519194 - 43519296
Alignment:
Q  33 ttttgcatttttggcccct-agaccaattttgactaggtcagtgcatacgtgacacccatatcactttatacattaggcttaattgcagttttggccccc 131  Q
    ||||||| ||||||||||| |  |||||||| ||||| ||| ||||||||||||||||| ||||||||||  |||||| ||||||||||||||| ||| |    
T  43519194 ttttgcacttttggcccctcatgccaattttaactagatcaatgcatacgtgacacccaaatcactttatttattaggtttaattgcagttttgaccctc 43519293  T
Q  132 aag 134  Q
    |||    
T  43519294 aag 43519296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 295
Target Start/End: Original strand, 38258747 - 38258820
Alignment:
Q  223 aagggagtaaacttaggggactgatttgttattg-tttatttataagggaccaaaatcgcaagattgtgatact 295  Q
    ||||| |||||| |||||| |||||||||||||| ||| |||| | ||| ||||||||||||||||||||||||    
T  38258747 aagggggtaaacgtagggggctgatttgttattgttttttttacagggggccaaaatcgcaagattgtgatact 38258820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 295
Target Start/End: Complemental strand, 43519224 - 43519124
Alignment:
Q  195 aaaattggtatg-ggggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtgata 293  Q
    |||||||| ||| ||||||||||||| |||| ||  ||| |||||||| ||||||||||||||||| ||||||   |  |||||||||||||||||||||    
T  43519224 aaaattggcatgaggggccaaaagtgcaaaaagggataa-cttagggggctgatttgttattgtttttttatagaaggtcaaaatcgcaagattgtgata 43519126  T
Q  294 ct 295  Q
    ||    
T  43519125 ct 43519124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 43519427 - 43519362
Alignment:
Q  31 ccttttgcatttttggcccctagaccaattttgactaggtcagtgcatacgtgacacccatatcac 96  Q
    ||||||||| |||||| ||| |||||||||||||| | |||| |||||||||| |||||| |||||    
T  43519427 ccttttgcacttttggtccccagaccaattttgaccaagtcaatgcatacgtggcacccacatcac 43519362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 295
Target Start/End: Complemental strand, 122526 - 122439
Alignment:
Q  207 ggggccaaaagtgtaaaagggagtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtgatact 295  Q
    |||| |||||||| ||||||| ||||| ||| ||| ||||||||||||||||| | || |||||  ||||||||||||||||| |||||    
T  122526 ggggacaaaagtgcaaaagggggtaaatttaaggggctgatttgttattgtttttatagaaggg-tcaaaatcgcaagattgtaatact 122439  T

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Target: scaffold0734 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 295
Target Start/End: Complemental strand, 1975 - 1910
Alignment:
Q  229 gtaaacttaggggactgatttgttattgtttatttataagggaccaaaatcgcaagattgtgatact 295  Q
    |||||| || ||| ||||||||||||||||| |||||| |||||||||||| |||||||||| ||||    
T  1975 gtaaacataaggggctgatttgttattgttt-tttataggggaccaaaatctcaagattgtgttact 1910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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