View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13169_high_12 (Length: 323)

Name: NF13169_high_12
Description: NF13169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13169_high_12
NF13169_high_12
[»] chr2 (9 HSPs)
chr2 (32-294)||(6915277-6915539)
chr2 (149-247)||(10543505-10543603)
chr2 (149-247)||(10471307-10471405)
chr2 (149-247)||(28106207-28106305)
chr2 (167-247)||(27966389-27966469)
chr2 (149-247)||(10859023-10859121)
chr2 (168-230)||(9081351-9081413)
chr2 (253-294)||(10507349-10507390)
chr2 (176-240)||(10505487-10505551)
[»] chr7 (4 HSPs)
chr7 (149-247)||(15044800-15044898)
chr7 (62-152)||(15043971-15044061)
chr7 (249-291)||(15045570-15045612)
chr7 (32-64)||(15043822-15043854)
[»] chr5 (1 HSPs)
chr5 (149-247)||(33601026-33601124)


Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 32 - 294
Target Start/End: Complemental strand, 6915539 - 6915277
Alignment:
Q  32 tcacccttccgaatgacgccctcataaactcttagatatgttaactgaccaaacttcctttgctccaacttgaaagccaatgctacaaggggcccatcgg 131  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  6915539 tcacccttccgaatgacaccctcataaactcttagatatgttaactgaccaaacttcgtttgctccaacttgaaagccaatgctacaagaggcccatcgg 6915440  T
Q  132 gacttccagtcagctgaaccttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccag 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6915439 gacttccagtcagctgaaccttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataactaactacaccatccag 6915340  T
Q  232 aagtggttgtacccccgtgtttttgacagcactacccatgaataccggtataaatttccgtgc 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915339 aagtggttgtacccccgtgtttttgacagcactacccatgaataccggtataaatttccgtgc 6915277  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 10543505 - 10543603
Alignment:
Q  149 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 247  Q
    ||||| |||||||||||||||||| | ||||||||||||||| ||||| | ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  10543505 accttttcctcattcttggattggacgagagcataattactagcttcagttggacacggcaaataattaagtacaccatccaaaagtagttgtaacccc 10543603  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 10471307 - 10471405
Alignment:
Q  149 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 247  Q
    ||||| ||||||||||| |||||| | ||||||||||||||| ||||| | ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  10471307 accttttcctcattcttagattggacgagagcataattactagcttcagttggacacggcaaataattaagtacaccatccaaaagtagttgtagcccc 10471405  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 28106305 - 28106207
Alignment:
Q  149 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 247  Q
    ||||| ||| ||| ||| ||||||||||||| |||||||||| ||||||| ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  28106305 accttttccccatgcttagattggtcaagagtataattactagcttcaattggacacggcaaataattaattacaccatccaaaagtagttgtagcccc 28106207  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 247
Target Start/End: Original strand, 27966389 - 27966469
Alignment:
Q  167 gattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 247  Q
    ||||||||||||| |||||||||| ||||||| ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  27966389 gattggtcaagagtataattactagcttcaattggacacggcaaataattaattacaccatccaaaagtagttgtagcccc 27966469  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 10859023 - 10859121
Alignment:
Q  149 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 247  Q
    ||||| ||| ||||||| |||| ||| |||| |||||||||||||||| | ||||| ||||||||| ||  ||||||||||| |||| |||||| ||||    
T  10859023 accttttccccattcttagatttgtcgagagaataattactaacttcagttggacagggcaaataattagttacaccatccaaaagtagttgtagcccc 10859121  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 9081413 - 9081351
Alignment:
Q  168 attggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatcca 230  Q
    ||||||| || |||||||||||  ||||||| ||||| ||||||||| ||| |||||||||||    
T  9081413 attggtcgagcgcataattacttgcttcaattggacacggcaaataattaagtacaccatcca 9081351  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 294
Target Start/End: Original strand, 10507349 - 10507390
Alignment:
Q  253 tttgacagcactacccatgaataccggtataaatttccgtgc 294  Q
    ||||| |||||| ||||||||||| |||||||||||||||||    
T  10507349 tttgaaagcactgcccatgaatacgggtataaatttccgtgc 10507390  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 10505487 - 10505551
Alignment:
Q  176 agagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttg 240  Q
    ||||||||||||||| ||||| | ||||| ||||||||| |||  |||||||||| |||| ||||    
T  10505487 agagcataattactagcttcagttggacacggcaaataattaagcacaccatccaaaagtagttg 10505551  T

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Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 15044800 - 15044898
Alignment:
Q  149 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 247  Q
    ||||||||||| || || ||||||||||| ||||||||| |||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||| ||||    
T  15044800 accttctcctccttattagattggtcaagggcataattattaacttcaattggacatggcaaataactaagtacaccatccagaagtggttgtatcccc 15044898  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 152
Target Start/End: Original strand, 15043971 - 15044061
Alignment:
Q  62 cttagatatgttaactgaccaaacttcctttgctccaacttgaaagccaatgctacaaggggcccatcgggacttccagtcagctgaacct 152  Q
    |||| |||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| | |||| ||||| |||||    
T  15043971 cttaaatatgttagctgaccaaacttactttcctccaacttgaaagccaatgctacaaggggcccatcaggattaccaggcagctcaacct 15044061  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 15045570 - 15045612
Alignment:
Q  249 tgtttttgacagcactacccatgaataccggtataaatttccg 291  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  15045570 tgtttttgaaagcactacccatgaataccggtataaatttccg 15045612  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 15043822 - 15043854
Alignment:
Q  32 tcacccttccgaatgacgccctcataaactctt 64  Q
    |||||||||||||||||||||||||||| ||||    
T  15043822 tcacccttccgaatgacgccctcataaattctt 15043854  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 33601026 - 33601124
Alignment:
Q  149 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 247  Q
    ||||| ||||||||||| ||||||   |||||||||||| |  ||||| | ||||| ||||||| | |||  |||||||||| ||||||||||| ||||    
T  33601026 accttttcctcattcttagattggatgagagcataattagttgcttcagttggacacggcaaattattaagcacaccatccaaaagtggttgtagcccc 33601124  T

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