View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13169_high_16 (Length: 301)
Name: NF13169_high_16
Description: NF13169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13169_high_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 27 - 301
Target Start/End: Original strand, 47579988 - 47580262
Alignment:
| Q |
27 |
caacttttcattcaaagggcttaaactcttgtatccatgttaaatttttcatgcaattcagcttctataagtttaggacttgaggatatataggattata |
126 |
Q |
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| T |
47579988 |
caacttttcattcaaagggcttgcactcttgtatccatgttaaatttttcatgcaattcagcttctataagtttaggacttgaggatatataggattata |
47580087 |
T |
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| Q |
127 |
ttgtatgattcttcccctttaatttttccaatcactgttgcagctggcaacttgtattgaagttgggcttccggcacttattgctatggttttcatctct |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
47580088 |
ttgtatgattcttcccctttaatttttccaatcactgttgcagctggcaacttgtattgaagttgggcttccggcacttattgttatggttttcatctct |
47580187 |
T |
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| Q |
227 |
caggcaagttaattagtgatttaaaatccattctttttcttaaattctggtactgaatgtgtttattgttttata |
301 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
47580188 |
caggcaagttaattagtgatttaaaatccattctatttcttaaattctggtactgaatgtgtttattgttttata |
47580262 |
T |
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