View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13169_high_5 (Length: 456)
Name: NF13169_high_5
Description: NF13169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13169_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 17107712 - 17108152
Alignment:
| Q |
1 |
ctctttacgtggagtgaggttttaaacctaacttgtaacatcaaatcagaccacagggctggatctgcatatctggaattgatcaggagcattgtggaca |
100 |
Q |
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| T |
17107712 |
ctctttacgtggagtgaggttttatacctaacttgcaacatcaaaccagttcacagggctggatcagcatatctggaattgatcaggagtattgtggaca |
17107811 |
T |
|
| Q |
101 |
cctatatgcatcgacaacaatacaagtaagtctaatttttatcgaagctttgatcactatgctagaattctagtagatattgatctttctggacagttac |
200 |
Q |
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| T |
17107812 |
cctatatgcatcgacaacaatactagcaagtctaatttttatcgaagctttgatcaccatgctagaattctggtagatgttgatctttctggaaagttac |
17107911 |
T |
|
| Q |
201 |
atggtaaaatgttagttgaaagatctgaatactcattctatgtggaca-----ttgattctgaaaaactccatagtttggtaatgttagcaaaaatgttc |
295 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17107912 |
atgataaaatgttagttgaaagatctgaatactcattctatgtggacattgatttgattctgaaaaactccatagtttggtaatgttagcaaaaatgttc |
17108011 |
T |
|
| Q |
296 |
ggcattcgatcaatgagtgcaagaaagccaagatttatagagatgataaggaggataaaaaatgctaaagctcgtaaaaagattcccataaaggttctat |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17108012 |
ggcattcgatcaatgagtgcaagaaagccaagatttatagagatgataaggaggataaaaaatgctaaagctcgtaaaaagattcccataaaggttctat |
17108111 |
T |
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| Q |
396 |
gcaaatatgtcaataatcccattatggcttacaatgatgat |
436 |
Q |
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| T |
17108112 |
gcaaatatgtcaataatcccattatggcttacaataatgat |
17108152 |
T |
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