View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13169_high_6 (Length: 396)
Name: NF13169_high_6
Description: NF13169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13169_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 27 - 369
Target Start/End: Complemental strand, 28209835 - 28209493
Alignment:
| Q |
27 |
catggcaaagttacaagtggattctagctcacaaaaaatggatgcaataataaatttgggtttaagattctcaaacaagaatgaagagttaaaacttttg |
126 |
Q |
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| T |
28209835 |
catgacaaagttacaagtggattctagctcacaaaaaatggatgcaataataaatctgggtttaagattctcaaacaagaatgaagagttaaaacttttg |
28209736 |
T |
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| Q |
127 |
tatggtcctctttttgtagaggtaatcagtaatgatgtcttattaggtaggactaaagttaaaggattctctcaagtgcctaaaaatgacacaaatttgg |
226 |
Q |
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| T |
28209735 |
tatggtcctctttttgtagaggtaatcagtaatgatgtcttattaggtaggactaaagttaaaggattctctcaggtgcctaaaaatgacacaaatttgg |
28209636 |
T |
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| Q |
227 |
atatgacaatgacaacaaatgatgaaaatgttaacgtatatgctacagatgatttaaaatcagacatcaaggcatatgagatggtgtttgacgtgtatgt |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28209635 |
atatgacaatgacaacaaatgatgaaaatgttaacgtatatgctacagatgatttaaaatcagacatcaaggcatatgagatggtgtttgacgtgtatgt |
28209536 |
T |
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| Q |
327 |
tagtggaaacattggtgtgcaaattggtagtttgcatatggtc |
369 |
Q |
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| T |
28209535 |
tagtggaaacattggtgtgcaaattggtagtttgcatatggtc |
28209493 |
T |
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