View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13169_high_9 (Length: 338)
Name: NF13169_high_9
Description: NF13169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13169_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 27105474 - 27105795
Alignment:
| Q |
1 |
caacttgcgtctaataccagttacaatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatctccacacataacctgcaatt |
100 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27105474 |
caacttgcgtctaataccagctacaatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatctccacacataacctgcaatt |
27105573 |
T |
|
| Q |
101 |
gattcaaaagttgtgaaccttatacctccactttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaataatatttcttca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27105574 |
gattcaaaagttgtgaaccttatacctccactttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatatttcttca |
27105673 |
T |
|
| Q |
201 |
taactgtagtgttgtcttgattcagaaaaggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgtttagttattgatccaataag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27105674 |
taactgtagtgttgtcttgattcagaaaaggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgtttagttattgatccaataag |
27105773 |
T |
|
| Q |
301 |
tctctctctttcccacacaggt |
322 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
27105774 |
tctctctctttcccacacaggt |
27105795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 5 - 322
Target Start/End: Original strand, 27098479 - 27098796
Alignment:
| Q |
5 |
ttgcgtctaataccagttacaatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatctccacacataacctgcaattgatt |
104 |
Q |
| |
|
|||||||||||||| | ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27098479 |
ttgcgtctaatacctgctacaatggtcagtactgtttcaccattgctgttaagttttaaggctcttgctcttgatctccaaacataacctgcaattgatt |
27098578 |
T |
|
| Q |
105 |
caaaagttgtgaaccttatacctccactttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaataatatttcttcataac |
204 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||||||| || | ||||||| |||||| ||||||||| |
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| T |
27098579 |
caaaagttgtgaaccttatatttccactttccttcatcaagctcaacttaagccttgttatcatttcaccatcaatattaaaacaatattgcttcataac |
27098678 |
T |
|
| Q |
205 |
tgtagtgttgtcttgattcagaaaaggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgtttagttattgatccaataagtctc |
304 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27098679 |
tgtagtgttgtgttgattcagaaaaggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgttcagttattgatccaataagtctc |
27098778 |
T |
|
| Q |
305 |
tctctttcccacacaggt |
322 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
27098779 |
tctctttcccacacaggt |
27098796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 45 - 323
Target Start/End: Original strand, 27062730 - 27063002
Alignment:
| Q |
45 |
cattgttgttaagttttaaggctcttgctcttgatctccacacataacctgcaattgattcaaaagttgtgaaccttatacctccactttccttcatcaa |
144 |
Q |
| |
|
||||| || ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||| |||||||| |
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| T |
27062730 |
cattgctgctaagttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttatat------tttcgttcatcaa |
27062823 |
T |
|
| Q |
145 |
actcaacttaagctttgttaacatttcaccctccacattaaaataatatttcttcataactgtagtgttgtcttgattcagaaaaggtgaaaatgcaaca |
244 |
Q |
| |
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|||||||||||| |||||| | |||| ||||| || |||||| |||||| ||| |||| | |||| || |||||||| ||| ||||||||||||||| |
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| T |
27062824 |
actcaacttaagtcttgttatcgtttcgccctctactttaaaacaatattgcttaataattttagtattaggttgattcacaaagggtgaaaatgcaaca |
27062923 |
T |
|
| Q |
245 |
gattccttgttcatagggctttctggaaatggttgtttagttattgatccaataagtctctctctttcccacacaggtt |
323 |
Q |
| |
|
||||| ||| ||| |||| || ||||||||||||| ||||||||| ||||| | | ||||||||||||||||||| |
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|
| T |
27062924 |
gattctctgtccatggggcattgtggaaatggttgtgtagttattgttccaacttggttttctctttcccacacaggtt |
27063002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 24 - 323
Target Start/End: Original strand, 27041354 - 27041653
Alignment:
| Q |
24 |
caatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatctccacacataacctgcaattgattcaaaagttgtgaaccttat |
123 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| || |
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| T |
27041354 |
caatggtcaacactgtttcaccattgctgttaagttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaacctcat |
27041453 |
T |
|
| Q |
124 |
acctccactttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaataatatttcttcataactgtagtgttgtcttgattc |
223 |
Q |
| |
|
| || ||| |||||||||||||| ||||| ||||| |||||||||||| || |||||| |||||| || || | ||||| || | |||||| |
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| T |
27041454 |
tttttcatttttattcatcaaactcaatttaagtcctgttatcatttcaccctctactttaaaacaatattgtttaattatcgtagtattattttgattt |
27041553 |
T |
|
| Q |
224 |
agaaaaggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgtttagttattgatccaataagtctctctctttcccacacaggtt |
323 |
Q |
| |
|
| ||| ||||||| || ||||||||| || ||| || | || |||||| |||| | ||| |||||||| || || | ||||||||||||||||||| |
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|
| T |
27041554 |
acaaagggtgaaagtgaaacagattctcggtccatgggacattgtggaaaaggttttatagctattgatcgaacttgtttttctctttcccacacaggtt |
27041653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 45 - 323
Target Start/End: Original strand, 27069797 - 27070075
Alignment:
| Q |
45 |
cattgttgttaagttttaaggctcttgctcttgatctccacacataacctgcaattgattcaaaagttgtgaaccttatacctccactttccttcatcaa |
144 |
Q |
| |
|
||||| || |||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||| ||| | |||||| |||||||| |
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|
| T |
27069797 |
cattgctgctaagctttaaggctcttgctcttgacctccacacataacctgcaagaacttcaaaagttgtaaaccctattttttcacttttattcatcaa |
27069896 |
T |
|
| Q |
145 |
actcaacttaagctttgttaacatttcaccctccacattaaaataatatttcttcataactgtagtgttgtcttgattcagaaaaggtgaaaatgcaaca |
244 |
Q |
| |
|
|||||||||||| |||||| | |||| ||||| || |||||| |||||| ||| |||| |||||| || |||||||| ||| ||||||||||||||| |
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|
| T |
27069897 |
actcaacttaagtcttgttatcgtttcgccctctactttaaaagaatattgcttaataattgtagtattagtttgattcacaaagggtgaaaatgcaaca |
27069996 |
T |
|
| Q |
245 |
gattccttgttcatagggctttctggaaatggttgtttagttattgatccaataagtctctctctttcccacacaggtt |
323 |
Q |
| |
|
|||| ||| ||| || | || |||||| |||||| ||| ||||||||||| || | ||||||||||||||||||| |
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|
| T |
27069997 |
gattttctgtccatgggacattgtggaaaaggttgtatagctattgatccaacttgtgtttctctttcccacacaggtt |
27070075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 5 - 323
Target Start/End: Original strand, 27085813 - 27086131
Alignment:
| Q |
5 |
ttgcgtctaataccagttacaatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatctccacacataacctgcaattgatt |
104 |
Q |
| |
|
||||||||| ||||| | ||||||| | | ||||| ||||||| | |||||||||||||||||||||||||| ||||||||||||||||||| || |
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|
| T |
27085813 |
ttgcgtctactaccaactgcaatggttagcgctgttaaaccattgcttttaagttttaaggctcttgctcttgacctccacacataacctgcaagcactt |
27085912 |
T |
|
| Q |
105 |
caaaagttgtgaaccttatacctccactttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaataatatttcttcataac |
204 |
Q |
| |
|
|||||||||||||||||||| | || |||| |||||||||||||||||||| || ||| |||||||||||| || |||||| |||||| || || | |
|
|
| T |
27085913 |
caaaagttgtgaaccttatattttcattttcattcatcaaactcaacttaagtcttcttatcatttcaccctctactttaaaacaatattgtttaattat |
27086012 |
T |
|
| Q |
205 |
tgtagtgttgtcttgattcagaaaaggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgtttagttattgatccaataagtctc |
304 |
Q |
| |
|
||||| || | |||||| | ||| ||||||| || ||||||||| || ||| || | || |||||| | |||| ||| ||||||||||| || | |
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|
| T |
27086013 |
cgtagtattattttgatttacaaagggtgaaagtgaaacagattctcggtccatgggacattgtggaaaagtttgtatagctattgatccaacttgtttt |
27086112 |
T |
|
| Q |
305 |
tctctttcccacacaggtt |
323 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
27086113 |
tctctttcccacacaggtt |
27086131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 27056648 - 27056765
Alignment:
| Q |
5 |
ttgcgtctaataccagttacaatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatctccacacataacctgcaattgatt |
104 |
Q |
| |
|
||||||||||||||| | ||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||| | | | |
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|
| T |
27056648 |
ttgcgtctaataccaactgcaatggtcagcactgtttcaccattgctgttaagttttaaggctcttgctcttgacctctacacataacctgcaagt-act |
27056746 |
T |
|
| Q |
105 |
caaaagttgtgaaccttat |
123 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
27056747 |
caaaagttgtgaaccttat |
27056765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 27045773 - 27045834
Alignment:
| Q |
30 |
tcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatctccacacataa |
91 |
Q |
| |
|
|||||| ||||| ||||||||| |||||| |||||||||||||||||| |||||||||||| |
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|
| T |
27045773 |
tcaacattgtttttccattgttgctaagttgtaaggctcttgctcttgacctccacacataa |
27045834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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