View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13169_low_1 (Length: 358)
Name: NF13169_low_1
Description: NF13169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13169_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 3 - 345
Target Start/End: Original strand, 34593238 - 34593579
Alignment:
| Q |
3 |
atcaagaggaattaccgacatctcaactggttgctggcacctcggagaacttccatcctctaacgcctacctcaaaaattttattnnnnnnnnnggatag |
102 |
Q |
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| T |
34593238 |
atcaagaggaaacaccgacatctcaactggttgctggcacctcggagaacttccatcctctaccgcctacctcaaaaattttattaaaaaaaaaggatag |
34593337 |
T |
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| Q |
103 |
tgtatgaaatcatgggatcaaaaaacaagaaaattacctccaaatcattagtacttctcactttctttccttgaactcctagtttatctgcaataacaga |
202 |
Q |
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| T |
34593338 |
tgtatgaaatcaagggatcaaaa-acaagaaagttacctccaaatcattagtacttttcactttctttccttgaactcctagtttgtctgcaataacaga |
34593436 |
T |
|
| Q |
203 |
aggaaaattagattttttgagtgttatatcgtattgacatatagaagaaagcaatgcttttgtctttctagtaattcatgaattctgttttatctatacc |
302 |
Q |
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| T |
34593437 |
aggaaaatttgattttttgagtgttatatcgtattgacatatagaagaaagcaatgcttttgtctttctagtaattcatgaattctgttttatctatacc |
34593536 |
T |
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| Q |
303 |
ttggtttactgcaataacttccgagttggttattagttcatat |
345 |
Q |
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| T |
34593537 |
ttggtttactgcaataacttccgagttagttattaattcatat |
34593579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 34577750 - 34577794
Alignment:
| Q |
301 |
ccttggtttactgcaataacttccgagttggttattagttcatat |
345 |
Q |
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| T |
34577750 |
ccttggtttactgcaataacttctgagttgcttatcaattcatat |
34577794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 32589981 - 32590026
Alignment:
| Q |
299 |
taccttggtttactgcaataacttccgagttggttattagttcata |
344 |
Q |
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| T |
32589981 |
taccttggtttactgcaataacttcagagttgcttatcaattcata |
32590026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 32600429 - 32600474
Alignment:
| Q |
299 |
taccttggtttactgcaataacttccgagttggttattagttcata |
344 |
Q |
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||||||||||||||||||||||||| |||||| |||| | |||||| |
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| T |
32600429 |
taccttggtttactgcaataacttcagagttgcttatcaattcata |
32600474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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