View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1316_low_1 (Length: 317)
Name: NF1316_low_1
Description: NF1316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1316_low_1 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 96 - 317
Target Start/End: Complemental strand, 1251389 - 1251164
Alignment:
| Q |
96 |
aaagctaagagctcccataagatgacctcatagctaaaaacatcacacctaaaaaatgaatccgacaatgtgttaatcattcattcatt----ttgtagc |
191 |
Q |
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| T |
1251389 |
aaagctaagagctcccataagatgacctcatagctaaaaacatcacacctaaaaaatgaatccgacaatgtgttaatcattcattcattcattttgtagc |
1251290 |
T |
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| Q |
192 |
aatattataataaatacaaagattaacaagcttacttttcatcatactctttactcagcaataactcaatagcccttccctgaggctgaaaaatatatta |
291 |
Q |
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| T |
1251289 |
aatattataataaatacaaagattaacaagcttacttttcatcatactctttactcagcaataactcaatagcccttccctgaggctgaaaaatatatta |
1251190 |
T |
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| Q |
292 |
tgttaagtgtcttaattaatatttgt |
317 |
Q |
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||||||||||| |||||||||||||| |
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| T |
1251189 |
tgttaagtgtcataattaatatttgt |
1251164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 15021794 - 15021710
Alignment:
| Q |
102 |
aagagctcccataagatgacctcatagctaaaaacatcacacctaaaaaatgaatccgacaatgtgttaatcattcattcattttg |
187 |
Q |
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| T |
15021794 |
aagagctcccataagatgaccccataactaaaaacatcacacctacaaaatgaat-cgacaatgtgttgatcactcattcattttg |
15021710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 15028912 - 15028828
Alignment:
| Q |
102 |
aagagctcccataagatgacctcatagctaaaaacatcacacctaaaaaatgaatccgacaatgtgttaatcattcattcattttg |
187 |
Q |
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| T |
15028912 |
aagagctcccataagatgaccccataactaaaaacatcacacctacaaaatgaat-cgacaatgtgttgatcactcattcattttg |
15028828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 15007677 - 15007593
Alignment:
| Q |
102 |
aagagctcccataagatgacctcatagctaaaaacatcacacctaaaaaatgaatccgacaatgtgttaatcattcattcattttg |
187 |
Q |
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| T |
15007677 |
aagagctcccataagatgaccccataactaaaaatatcacacctacaaaatgaat-cgacaatgtgttgatcactcattcattttg |
15007593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 102 - 238
Target Start/End: Complemental strand, 17232485 - 17232349
Alignment:
| Q |
102 |
aagagctcccataagatgacctcatagctaaaaacatcacacctaaaaaatgaatccgacaatgtgttaatcattcattcattttgtagcaatattataa |
201 |
Q |
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||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
17232485 |
aagagctcccataagatgaccccatagcttaaaacatcacacctataaaatgaatccgacaatgtgttaatcattcattcattttgtagcaacataataa |
17232386 |
T |
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| Q |
202 |
taaatacaaagattaacaagcttacttttcatcatac |
238 |
Q |
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| T |
17232385 |
taaatacaaagaataacaagcttacttttcatcatac |
17232349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 102 - 234
Target Start/End: Complemental strand, 45204855 - 45204723
Alignment:
| Q |
102 |
aagagctcccataagatgacctcatagctaaaaacatcacacctaaaaaatgaatccgacaatgtgttaatcattcattcattttgtagcaatattataa |
201 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||| ||||||||| |||| |
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| T |
45204855 |
aagagctcccataatatgaccccatagctaaaaacatcacacctacaaaatgaatccgataatgttttaatcattcattcattttatagcaatataataa |
45204756 |
T |
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| Q |
202 |
taaatacaaagattaacaagcttacttttcatc |
234 |
Q |
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||||||| ||| |||||| ||||||||||||| |
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| T |
45204755 |
taaataccgagaataacaatcttacttttcatc |
45204723 |
T |
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