View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1316_low_3 (Length: 252)
Name: NF1316_low_3
Description: NF1316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1316_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 32979193 - 32979346
Alignment:
| Q |
1 |
agccacctagagtgcttgacaatgctgacaaaattcatctatgaatttccctctaaattgtggctgtgac---ttccagacgaaaagttagattctactt |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
32979193 |
agccacctagagtgcttgacaatgctgacaaaattcatctatgaatttcc-tctaaattgtggctgtgacgacttccaaaccaaaagttagattctactt |
32979291 |
T |
|
| Q |
98 |
tcttcccataataacaaacacgaaaagacatatctatccctacattgcatccaga |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32979292 |
tcttcccataataacaaacacgaaaagacatatctatccctacattgcatccaga |
32979346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 223
Target Start/End: Original strand, 32979377 - 32979412
Alignment:
| Q |
188 |
acccataagaacaaaacccttataacaacaacaaac |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
32979377 |
acccataagaacaaaacccttataacaacaacaaac |
32979412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University