View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1316_low_4 (Length: 252)

Name: NF1316_low_4
Description: NF1316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1316_low_4
NF1316_low_4
[»] chr6 (4 HSPs)
chr6 (166-215)||(19305871-19305920)
chr6 (168-215)||(10122354-10122401)
chr6 (168-215)||(10126551-10126598)
chr6 (168-215)||(19310337-19310384)
[»] chr2 (4 HSPs)
chr2 (166-215)||(38255469-38255518)
chr2 (166-214)||(43154122-43154170)
chr2 (166-214)||(43159350-43159398)
chr2 (166-215)||(38250125-38250174)
[»] chr1 (7 HSPs)
chr1 (166-215)||(11471342-11471391)
chr1 (166-215)||(11318763-11318812)
chr1 (166-215)||(11476784-11476833)
chr1 (166-215)||(28244219-28244270)
chr1 (168-215)||(17431703-17431750)
chr1 (168-215)||(17430792-17430839)
chr1 (168-215)||(50017630-50017677)
[»] chr5 (5 HSPs)
chr5 (166-215)||(25384065-25384114)
chr5 (168-215)||(25379470-25379517)
chr5 (168-215)||(25484266-25484313)
chr5 (168-214)||(10292976-10293022)
chr5 (166-215)||(25482738-25482787)
[»] chr7 (3 HSPs)
chr7 (166-215)||(22492408-22492457)
chr7 (166-215)||(22489272-22489321)
chr7 (168-215)||(48944314-48944361)
[»] chr4 (5 HSPs)
chr4 (170-210)||(48796046-48796086)
chr4 (168-215)||(28166934-28166981)
chr4 (168-215)||(28167592-28167639)
chr4 (168-215)||(54362253-54362300)
chr4 (170-207)||(48792843-48792880)
[»] chr3 (1 HSPs)
chr3 (168-215)||(33862381-33862428)


Alignment Details
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 19305871 - 19305920
Alignment:
Q  166 aagttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19305871 aagttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 19305920  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 10122354 - 10122401
Alignment:
Q  168 gttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10122354 gttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 10122401  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 10126598 - 10126551
Alignment:
Q  168 gttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 215  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  10126598 gttatataacattgtccaataagggtgtgccacgtggcacaccctttt 10126551  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 19310384 - 19310337
Alignment:
Q  168 gttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 215  Q
    |||||||||||||||||||| ||| |||||||||||||||||| ||||    
T  19310384 gttatataacattgtccaataaggatgtgccacgtggcacaccttttt 19310337  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 38255518 - 38255469
Alignment:
Q  166 aagttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38255518 aagttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 38255469  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 43154122 - 43154170
Alignment:
Q  166 aagttatataacattgtccaatcagggtgtgccacgtggcacacccttt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43154122 aagttatataacattgtccaatcagggtgtgccacgtggcacacccttt 43154170  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 43159398 - 43159350
Alignment:
Q  166 aagttatataacattgtccaatcagggtgtgccacgtggcacacccttt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43159398 aagttatataacattgtccaatcagggtgtgccacgtggcacacccttt 43159350  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 38250125 - 38250174
Alignment:
Q  166 aagttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 215  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38250125 aagttatataacattgtccaatcagggtgtgccacatggcacaccctttt 38250174  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 11471342 - 11471391
Alignment:
Q  166 aagttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11471342 aagttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 11471391  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 11318812 - 11318763
Alignment:
Q  166 aagttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 215  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11318812 aagttatataacattgtccaatcagggtgtgccacatggcacaccctttt 11318763  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 11476833 - 11476784
Alignment:
Q  166 aagttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 215  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11476833 aagttatataacattgtccaatcagggtgtgccacatggcacaccctttt 11476784  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 28244219 - 28244270
Alignment:
Q  166 aagttatataacattgtccaatcagggtgtgccacg--tggcacaccctttt 215  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  28244219 aagttatataacattgtccaatcagggtgtgccacgtatggcacaccctttt 28244270  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 17431750 - 17431703
Alignment:
Q  168 gttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 215  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||    
T  17431750 gttatataacattgtccaatcagggtgtgccatgtggcacaccttttt 17431703  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 17430792 - 17430839
Alignment:
Q  168 gttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 215  Q
    ||||||||| |||||||||||||| |||||||||||||||||| ||||    
T  17430792 gttatataatattgtccaatcaggatgtgccacgtggcacaccatttt 17430839  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 50017630 - 50017677
Alignment:
Q  168 gttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 215  Q
    |||||||||||||||||||| ||| | |||||||||||||||||||||    
T  50017630 gttatataacattgtccaataaggatatgccacgtggcacaccctttt 50017677  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 25384114 - 25384065
Alignment:
Q  166 aagttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 215  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25384114 aagttatataacatggtccaatcagggtgtgccacgtggcacaccctttt 25384065  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 25379470 - 25379517
Alignment:
Q  168 gttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 215  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||    
T  25379470 gttatataacattgtccaataagggtgtgccacatggcacaccctttt 25379517  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 25484313 - 25484266
Alignment:
Q  168 gttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 215  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||    
T  25484313 gttatataacattgtccaataagggtgtgccacgtggcacatcctttt 25484266  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 10293022 - 10292976
Alignment:
Q  168 gttatataacattgtccaatcagggtgtgccacgtggcacacccttt 214  Q
    |||||||||||||| ||||| | ||||||||||||||||||||||||    
T  10293022 gttatataacattggccaattaaggtgtgccacgtggcacacccttt 10292976  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 25482738 - 25482787
Alignment:
Q  166 aagttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 215  Q
    |||||||||||||||| ||||| ||| |||||||| ||||||||||||||    
T  25482738 aagttatataacattgcccaattaggatgtgccacatggcacaccctttt 25482787  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 22492457 - 22492408
Alignment:
Q  166 aagttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 215  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  22492457 aagttatataacattgcccaatcaggatgtgccacgtggcacaccctttt 22492408  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 22489272 - 22489321
Alignment:
Q  166 aagttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 215  Q
    ||||||||||||||||| |||||||||||||||| | |||||||||||||    
T  22489272 aagttatataacattgttcaatcagggtgtgccatgcggcacaccctttt 22489321  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 48944314 - 48944361
Alignment:
Q  168 gttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 215  Q
    ||||||||||||||| || |||||||||||||||||||||||| ||||    
T  48944314 gttatataacattgttcagtcagggtgtgccacgtggcacaccttttt 48944361  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 48796086 - 48796046
Alignment:
Q  170 tatataacattgtccaatcagggtgtgccacgtggcacacc 210  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  48796086 tatataacattgcccaatcagggtgtgccacgtggcacacc 48796046  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 28166934 - 28166981
Alignment:
Q  168 gttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 215  Q
    |||||||||||||| | |||||||||||||||||||||||||| ||||    
T  28166934 gttatataacattggcgaatcagggtgtgccacgtggcacaccttttt 28166981  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 28167639 - 28167592
Alignment:
Q  168 gttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 215  Q
    |||||||||||||| | |||||||||||||||||| ||||||||||||    
T  28167639 gttatataacattggcgaatcagggtgtgccacgtcgcacaccctttt 28167592  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 54362253 - 54362300
Alignment:
Q  168 gttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 215  Q
    |||||||||||||| | |||||||||||||||| ||||||||||||||    
T  54362253 gttatataacattgcctaatcagggtgtgccacatggcacaccctttt 54362300  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 48792843 - 48792880
Alignment:
Q  170 tatataacattgtccaatcagggtgtgccacgtggcac 207  Q
    |||||||||||| |||||||||||||||||||||||||    
T  48792843 tatataacattgcccaatcagggtgtgccacgtggcac 48792880  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 33862381 - 33862428
Alignment:
Q  168 gttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 215  Q
    ||||||||||| || ||| |||||||||||||| ||||||||||||||    
T  33862381 gttatataacactgcccattcagggtgtgccacatggcacaccctttt 33862428  T

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