View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1316_low_5 (Length: 251)
Name: NF1316_low_5
Description: NF1316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1316_low_5 |
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| [»] chr6 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 2563140 - 2563361
Alignment:
| Q |
30 |
ataacaacccatgatagtgagagaagtaagttttggagtacataaaacaacttcgtaagagtgatctcccataatcgtgcagtcactagctactttcaaa |
129 |
Q |
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| T |
2563140 |
ataacaacccatgatagtgagagaagtaagttttggagtacataaaacaacttcgtaagagtgatctcccataatcgtgcagtcactagctactttcaaa |
2563239 |
T |
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| Q |
130 |
ctagaaatgttagaattaaatatgcagagggcttgtgcatcttcctctaaacaaaacttaataatgaccaaagtactcagcatcttacatgttgaaaagg |
229 |
Q |
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| T |
2563240 |
ctagaaatgttagaattaaatatgcagagggattgtgcatcttcctctaaacaaaacttaataatgaccaaagtactcagcatcttacatgttgaaaagg |
2563339 |
T |
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| Q |
230 |
gctcagcacaaccattttcact |
251 |
Q |
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| T |
2563340 |
gctcagcacaaccattttcact |
2563361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 34800037 - 34800090
Alignment:
| Q |
192 |
aatgaccaaagtactcagcatcttacatgttgaaaagggctcagcacaaccatt |
245 |
Q |
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| T |
34800037 |
aatgaccaaagtactcaacatgttacatgttgaaaagggctcaacacagccatt |
34800090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 251
Target Start/End: Complemental strand, 24986304 - 24986178
Alignment:
| Q |
125 |
tcaaactagaaatgttagaattaaatatgcagagggcttgtgcatcttcctctaaa-caaaacttaataatgaccaaagtactcagcatcttacatgttg |
223 |
Q |
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| T |
24986304 |
tcaaactagaaacttcagaattggatatgcagagggcttgtgcatcatcttgtaaatgacaactt-ataatgaccaaagtattcaacattttacattttg |
24986206 |
T |
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| Q |
224 |
aaaagggctcagcacaaccattttcact |
251 |
Q |
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| T |
24986205 |
aaaagggctcagcacagccattgtcact |
24986178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 24986391 - 24986345
Alignment:
| Q |
41 |
tgatagtgagagaagtaagttttggagtacataaaacaacttcgtaa |
87 |
Q |
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| T |
24986391 |
tgatagtgagagaagtaagttttggagtagaaaacacaactttgtaa |
24986345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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