View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13170_high_10 (Length: 252)
Name: NF13170_high_10
Description: NF13170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13170_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 39504733 - 39504510
Alignment:
| Q |
17 |
agtaacacccccgaccctcaggttccgcttcggaatctatccttggttcagacaagcatcgattctctccgaaccctcctgtcccaatccatcaccacca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39504733 |
agtaacacccccgaccctcaggttccgcttcggaatctatccttggttcagacgagcatcgattctctccgaaccctcctgtcccaatccatcaccacca |
39504634 |
T |
|
| Q |
117 |
acgctcctgtcaccaacgatcaattaaccgccgtctccaaccatatcttcactgtcctccaccataccatagtcaacgccgccgccctcgttcctggcgc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39504633 |
acgctcctgtcaccaacgatcaattaaccgccgtctccaaccaaatcttcaccgtcctccaccataccatagtcaacgccgccgccctcgttcctggcgt |
39504534 |
T |
|
| Q |
217 |
ctccgtctttccctccgccacctt |
240 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
39504533 |
ctccgtcttcccctccgccacctt |
39504510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University