View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13170_high_3 (Length: 577)
Name: NF13170_high_3
Description: NF13170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13170_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 6 - 563
Target Start/End: Complemental strand, 84751 - 84194
Alignment:
| Q |
6 |
gtagataattctgaagatatggccaagctttctggtctatgaacttcttagccgcaacaatttcttttgctgactccttagctcttgcagctgcctcagt |
105 |
Q |
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| T |
84751 |
gtagatcattctgaagatatggccaagctttctggtctatgaacttcttagccgcaacaatttcttttgctgactccttagctcttgcagctgcctcagt |
84652 |
T |
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| Q |
106 |
tggtgtcaatggttgaaggtagaacctttctttcaatggtagcttaaggtctcttgcttcatctgagttcagtgttccagctgacaaattccataaatca |
205 |
Q |
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| T |
84651 |
tggtgtcaatggttgaaggtagaacctttctttcaatggtagcttaaggtctcttgcttcatctgagttcagtgttccagctgacaaattccataaatca |
84552 |
T |
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| Q |
206 |
gttaattcaacattctaaaaattattggaaggtaacatccagtacttacacttagtgttctgtcnnnnnnncaacacttacaactaagtgttaaactgtg |
305 |
Q |
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| T |
84551 |
gttaattcaacattctaaaaattattggaaggtaacatccagtacttacacttagtgttctgtcaaaaaaacaacacttacaactaagtgttaaactgtg |
84452 |
T |
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| Q |
306 |
tatgtatcacacataatcaaataagacataatgtgtgtaacatgtcatagttgctattcaattacaagaaaagaaacaaatgggattccatgcagtaggg |
405 |
Q |
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| T |
84451 |
tatgtatcacacataatcaaataagacataatgtgtgtaacatgtcatagttgctattcaattacaagaaaagaaacaaatgggattccatgcagtaggg |
84352 |
T |
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| Q |
406 |
attcaccgttttctcccattaagaacatcgatggccatttaatcaagatggtacaattcagaatcaagttcggtatcttgaattataaaacaaaaatgaa |
505 |
Q |
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| T |
84351 |
attcaccgttttctcccattaagaacatcgatggccatttaatcaagatggtacaattcagaatcaagttcggtatcttgaattataaaacaaaaatgaa |
84252 |
T |
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| Q |
506 |
agtctgcaattttttgaactgttcggtcttgatctaatgatcaccgatgttctgaatg |
563 |
Q |
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| T |
84251 |
agtctgcaattttttgaactgttcggtcttgatctaatgatcaccgatgttctgaatg |
84194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 495
Target Start/End: Complemental strand, 32948302 - 32948254
Alignment:
| Q |
447 |
atcaagatggtacaattcagaatcaagttcggtatcttgaattataaaa |
495 |
Q |
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| T |
32948302 |
atcaagatggaacaatctagattcaagttcggtattttgaattataaaa |
32948254 |
T |
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