View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13170_high_4 (Length: 571)
Name: NF13170_high_4
Description: NF13170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13170_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 23914967 - 23914637
Alignment:
| Q |
1 |
ttaaagattgcggcaatagggaaggcaataaaatcccaacaacaagttaaagaaattatgaaaaaatatccttcttctcaacccatcaaagaatgtgcta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23914967 |
ttaaagattgcggcaatagggaaggcaataaaatcccaacaacaagttaaagaaattatgaaaaaatatccttcttctcaacccatcaaagaatgtgcta |
23914868 |
T |
|
| Q |
101 |
aggattataatagtgtggttggtcaattaagagttgcattgattgaagaaccggaccttatagacttggatatcagatatgctagtgatgcacttggaag |
200 |
Q |
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| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23914867 |
atgattataatagtgtggttggtcaattaaaagttgcattgattgaagaaccggaccttatagacttggatatcagatatgctagtgatgcacttggaag |
23914768 |
T |
|
| Q |
201 |
gtgtgaagatagcttagctcgtgaaaagaatgttaatacgtctgccattgctacattgaatcatgagatgcagttatataatgatattgtattgatagcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23914767 |
gtgtgaagatagcttagctcgtgaaaagaatgttaatacgtctgccattgctacattgaatcatgagatgcagttatataatgatattgtattgatagcc |
23914668 |
T |
|
| Q |
301 |
gcaggccatctataaataaattaatttatat |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
23914667 |
gcaggccatctataaataaattaatttatat |
23914637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 23922604 - 23922223
Alignment:
| Q |
1 |
ttaaagattgcggcaatagggaaggcaataaaatcccaacaacaagttaaagaaattatgaaaaaatatccttcttctcaacccatcaaagaatgtgcta |
100 |
Q |
| |
|
||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
23922604 |
ttaaagaatgcggcaataaagaaggcagtaaaatcccaacaacaagttaaagaaattatgaaaaaatatccttcttctcaaccaatcaaagaatgtgttg |
23922505 |
T |
|
| Q |
101 |
aggattataatagtgtggttggtcaattaagagttgcattgattgaagaaccggaccttatagacttggatatcagatatgctagtgatgcacttggaag |
200 |
Q |
| |
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| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| || |
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| T |
23922504 |
atgattataatagtgtggttggtcaattaaaagttgcattgattgaagaaccggacactatagacttggatatcaaatatgctagtgatgcacttggtag |
23922405 |
T |
|
| Q |
201 |
gtgtgaagatagcttagctcgtgaaaagaatgttaatacgtctgccattgctacattgaatcatgagatgcagttatataatgatattgtattgatagcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23922404 |
gtgtgaagatagcttagctcgtgaaaagaatgttaatacgtctgccattgctacattgaatcatgagatgcagttatataatgatattgtattgatagcc |
23922305 |
T |
|
| Q |
301 |
gcaggccatctataaataaattaatttatatatatttcatgaataaaaccataatttttctcctcac-tgtattattgtgttttcaa |
386 |
Q |
| |
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| ||||||||||||||||||| |||| ||||||||||||||||||||| || |||||||||||| ||||||||| ||||||||| |
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|
| T |
23922304 |
ggaggccatctataaataaataaatt----tatatttcatgaataaaaccacaa-ttttctcctcacttgtattattatgttttcaa |
23922223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 25803026 - 25802696
Alignment:
| Q |
1 |
ttaaagattgcggcaatagggaaggcaataaaatcccaacaacaagttaaagaaattatgaaaaaatatccttcttctcaacccatcaaagaatgtgcta |
100 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||| ||| | |||||||| ||||||||||||||||| | ||||||| ||| ||| | |
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|
| T |
25803026 |
ttaaagattgtggcaatagacaaggcaataaaatcccaacaagtagtcagagaaattactgaaaaatatccttcttctgatcccatcagagagtgttttg |
25802927 |
T |
|
| Q |
101 |
aggattataatagtgtggttggtcaattaagagttgcattgattgaagaaccggaccttatagacttggatatcagatatgctagtgatgcacttggaag |
200 |
Q |
| |
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| ||||| | || ||||||| | | ||| || |||||| ||| || ||||| | |||| |||| | ||| ||||||| |||||||| | | | |
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| T |
25802926 |
atgattacagtaccgtggttgttgaggtaaaaggagcattggctgaggatccggaattgatagggttggctgtcaaatatgctggtgatgcagtcgacat |
25802827 |
T |
|
| Q |
201 |
gtgtgaagatagcttagctcgtgaaaagaatgttaatacgtctgccattgctacattgaatcatgagatgcagttatataatgatattgtattgatagcc |
300 |
Q |
| |
|
||| ||| |||||||||| |||||||| |||||||| ||| ||||||||||| |||||||||||||| |||| |||| |||||||||| ||||||| |
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|
| T |
25802826 |
gtgcgaacgtagcttagctaatgaaaagattgttaatatttcttccattgctacactgaatcatgagatggagttgtatactgatattgtagtgatagct |
25802727 |
T |
|
| Q |
301 |
gcaggccatctataaataaattaatttatat |
331 |
Q |
| |
|
| ||| ||||||| ||| || ||||||||| |
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| T |
25802726 |
ggaggtcatctatgaatcaaaaaatttatat |
25802696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 24436098 - 24436001
Alignment:
| Q |
1 |
ttaaagattgcggcaatagggaaggcaataaaatcccaacaacaagttaaagaaattatgaaaaaatatccttcttctcaacccatcaaagaatgtgc |
98 |
Q |
| |
|
|||| ||||| |||||||| ||| |||| |||| ||||||| ||||| |||||||| | |||||| ||||||||||||||| ||||||||| |||||| |
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|
| T |
24436098 |
ttaaggattgtggcaatagagaatgcaacaaaagcccaacatcaagtcaaagaaatgaagaaaaagtatccttcttctcaaaccatcaaaggatgtgc |
24436001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 35074680 - 35074353
Alignment:
| Q |
1 |
ttaaagattgcggcaatagggaaggcaataaaatcccaacaacaagttaaagaaattatgaaaaaatatccttcttctcaacccatcaaagaatgtgcta |
100 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35074680 |
ttaaagattgtggcaatagagaaggcagtaaaatcccaacaacaagttaaagagattatgaacaaatatccttcttctcaacccatcaaagaatgtgggg |
35074581 |
T |
|
| Q |
101 |
aggattataatagtgtggttggtcaattaagagttgcattgattgaagaaccggaccttatagacttggatatcagatatgctagtgatgcacttggaag |
200 |
Q |
| |
|
| ||||| |||| |||||| | || || ||||||| ||| || ||||| | ||| | ||| | ||| |||||||| |||||||||| | |
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|
| T |
35074580 |
atgattacaatacggtggttatcgaggtacaaggtgcattgcgtgaggatccggaaatgataagcatggctgtcaattatgctagcgatgcacttgacat |
35074481 |
T |
|
| Q |
201 |
gtgtgaagatagcttagctcgtgaaaagaatgttaatacgtctgccattgctacattgaatcatgagatgcagttatataatgatattgtattgatagcc |
300 |
Q |
| |
|
||||||| |||||| ||| |||||||| ||| ||||| ||| |||||| | || |||||||||| ||| ||||||| | |||||||| |||||||| |
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|
| T |
35074480 |
gtgtgaacgtagcttggctgatgaaaagattgtcaatacttcttccattgttgcactgaatcatgacatgaagttatacacaaatattgtagtgatagcc |
35074381 |
T |
|
| Q |
301 |
gcaggccatctataaataaattaattta |
328 |
Q |
| |
|
| ||||||||||||||| ||| |||||| |
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|
| T |
35074380 |
ggaggccatctataaattaataaattta |
35074353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 35079649 - 35079333
Alignment:
| Q |
1 |
ttaaagattgcggcaatagggaaggcaataaaatcccaacaacaagttaaagaaattatgaaaaaatatccttcttctcaacccatcaaagaatgtgcta |
100 |
Q |
| |
|
||||||| || ||||||| ||||||||||||||||||||| | ||| ||||||||| ||||||||||||||||||||||||| ||||||||||| | | |
|
|
| T |
35079649 |
ttaaagactgtggcaataaagaaggcaataaaatcccaacatcgagtcaaagaaattgtgaaaaaatatccttcttctcaacctatcaaagaatgcggtg |
35079550 |
T |
|
| Q |
101 |
aggattataatagtgtggttggtcaattaagagttgcattgattgaagaaccggaccttatagacttggatatcagatatgctagtgatgcacttggaag |
200 |
Q |
| |
|
| ||||| |||| |||||| | | || || ||||||| || || ||||| | ||| ||||| | ||| ||||||||| |||||||||| | |
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|
| T |
35079549 |
atgattacaatacggtggttagcgaggtacaaggtgcattgcgcgaggatccggaaatgataagcttggctgtcaaatatgctagcgatgcacttgacat |
35079450 |
T |
|
| Q |
201 |
gtgtgaagatagcttagctcgtgaaaagaatgttaatacgtctgccattgctacattgaatcatgagatgcagttatataatgatattgtattgatagcc |
300 |
Q |
| |
|
||||||| |||||| ||| ||||||| ||||||||| ||| |||||||| ||||||||||||||||| ||| |||| ||||||||| | |||||| |
|
|
| T |
35079449 |
gtgtgaacgtagcttggctaacgaaaagattgttaatacttcttccattgctgcattgaatcatgagatgatgttgtatacagatattgtagtcatagcc |
35079350 |
T |
|
| Q |
301 |
gcaggccatctataaat |
317 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
35079349 |
ggaggccatctataaat |
35079333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 13435994 - 13436084
Alignment:
| Q |
1 |
ttaaagattgcggcaatagggaaggcaataaaatcccaacaacaagttaaagaaattatgaaaaaatatccttcttctcaacccatcaaag |
91 |
Q |
| |
|
|||| ||||| |||||||| || |||| |||| |||||| |||| |||||||| | |||||||||||| ||||||||| ||||||||| |
|
|
| T |
13435994 |
ttaaggattgtggcaatagataatgcaacaaaagtccaacataaagtcaaagaaatgacgaaaaaatatccctcttctcaagccatcaaag |
13436084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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