View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13170_high_5 (Length: 520)
Name: NF13170_high_5
Description: NF13170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13170_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 236 - 513
Target Start/End: Original strand, 14329539 - 14329816
Alignment:
| Q |
236 |
gattttgccttgaagnnnnnnntatcgcaagtgacttgcagaaccttagaatttacgattaacatagtttgtttgtttattcatgtatggctatgacaag |
335 |
Q |
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| T |
14329539 |
gattttgccttgaagaaaaaaatattgcaagtgacttgcagaaccttagaatttacgattaacatagtttgtttgtttattcatgtatggctatgacaag |
14329638 |
T |
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| Q |
336 |
ttgttttccaatttctatgccatgttttctaatttctatatacaaaccaacaagacaggagccttacattacatttttgttcatttatactttcatgatc |
435 |
Q |
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| T |
14329639 |
ttgttttccaatttctatgccatgttttctaatttctatatacaaaccaacaagacaggagccttacattacatttttgttcatttatactttcatgatc |
14329738 |
T |
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| Q |
436 |
ttaattacggtaaattttacaatttgggtgggtgatagactctcaagggaacctaagccctctgtgatatattcttcg |
513 |
Q |
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| T |
14329739 |
ttaattccggtaaattttacaatttaggtgggtgatagactctcaagggaacctaagccctctgtgatatattcttcg |
14329816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 14329371 - 14329533
Alignment:
| Q |
21 |
ttaactcatctttacaaaaccggtttgtgtatttataaactctaatcaggtgttgtctttattcaatgtgagacttcgattttttccaatggtactgagt |
120 |
Q |
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| T |
14329371 |
ttaactcatttttacaaaactggtttgtgtatttataaactctaattaggtgttgtctttattcaatgtgagacttcggtttttttcaat--------gt |
14329462 |
T |
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| Q |
121 |
agttcaggttgtttgtgtatgactttgtgggctaatctatgtacttgttgtgctctgatttggtttatgat |
191 |
Q |
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| T |
14329463 |
agttcacgctgtttgtgtatgactttgtgggctaatctatgtacttgttgtgctctggtttggtttatgat |
14329533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 365 - 512
Target Start/End: Original strand, 34194703 - 34194850
Alignment:
| Q |
365 |
taatttctatatacaaaccaacaagacaggagccttacattacatttttgttcatttatactttcatgatcttaattacggtaaattttacaatttgggt |
464 |
Q |
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||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||| ||||||||||| || || | ||||||||| ||||| ||| |
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| T |
34194703 |
taatttctatatacaaaccaacaagacggaagccgtacattacatttttgttcatttatgctttcatgatcctagttcctgtaaattttccaattcaggt |
34194802 |
T |
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| Q |
465 |
gggtgatagactctcaagggaacctaagccctctgtgatatattcttc |
512 |
Q |
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| T |
34194803 |
gggtgatagactctcaagggaacctaagccttctgtgatatatacttc |
34194850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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