View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13170_high_6 (Length: 494)
Name: NF13170_high_6
Description: NF13170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13170_high_6 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 311 - 494
Target Start/End: Original strand, 31125178 - 31125361
Alignment:
| Q |
311 |
tagcagccaaagcatgttgactcccacaagcaacagtcccaagtttaatctgcacaacattcactaaagcaagcataagaaacgcacatcccaaaacaga |
410 |
Q |
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| T |
31125178 |
tagcagccaaagcatgttgactcccacaagcaacagtcccaagtttaatctgcacaacattcactaaagcaagcataagaaacgcacatcccaaaacaga |
31125277 |
T |
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| Q |
411 |
tccaatcccagaaacaagcatcccaactctcaaaacagatccattaacatgagcaacatgcgaggaagttcttgaaagacgaat |
494 |
Q |
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| T |
31125278 |
tccaatcccagaaacaagcatcccaactctcaaaacagatccattaacatgagcgacatgagaggaagttctcgaaagacgaat |
31125361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 31124826 - 31124962
Alignment:
| Q |
13 |
cagacgcagacatc-aacacataaaaccaaacacaacataaacgttgagaattgatacatagataaaattttgagatggtaacatgatttaatgtaacca |
111 |
Q |
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| T |
31124826 |
cagacacagacatctaacacataaaaccaaacacaacataaacgttgagaattgatacatagataaaattttgagatggcaacatgatttaatgtaacca |
31124925 |
T |
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| Q |
112 |
gtgttagtgtcatatacattttagacagacacataca |
148 |
Q |
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| T |
31124926 |
gtgttagtgtcatatacattttagagagacacataca |
31124962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 145 - 241
Target Start/End: Original strand, 31125012 - 31125108
Alignment:
| Q |
145 |
tacagagatcatgaattcattcaaaagaacaaatacagcttnnnnnnncaaaacactctagttgaattgaacaattatttcatcaaaatctaacgag |
241 |
Q |
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| T |
31125012 |
tacagagatcatgaattcattcaaaagaacaaatacagcttaaaaaaacaaaacactctagttgaattgaacaattatttcatcaaaatctaacgag |
31125108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 311 - 444
Target Start/End: Original strand, 10615284 - 10615416
Alignment:
| Q |
311 |
tagcagccaaagcatgttgactcccacaagcaacagtcccaagtttaatctgcacaacattcactaaagcaagcataagaaacgcacatcccaaaacaga |
410 |
Q |
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| T |
10615284 |
tagcagctaaaacatgttgactcccacaagctacagtcccaaccttaatctgcataac-ttcactagagcaagcataagaaacccacaccctaaaacaga |
10615382 |
T |
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| Q |
411 |
tccaatcccagaaacaagcatcccaactctcaaa |
444 |
Q |
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| T |
10615383 |
tccaatcctagaaacaagcatcccaactctcaaa |
10615416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 313 - 436
Target Start/End: Original strand, 2420139 - 2420261
Alignment:
| Q |
313 |
gcagccaaagcatgttgactcccacaagcaacagtcccaagtttaatctgcacaacattcactaaagcaagcataagaaacgcacatcccaaaacagatc |
412 |
Q |
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| T |
2420139 |
gcagctaaaacatgttgactcccacaagctacagtcccaagcttaatctgcataac-ttcactagagcaagcataagaaacccacaccctaaaacaaatc |
2420237 |
T |
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| Q |
413 |
caatcccagaaacaagcatcccaa |
436 |
Q |
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| T |
2420238 |
caatcctagaaacaagcatcccaa |
2420261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 314 - 436
Target Start/End: Complemental strand, 46470025 - 46469904
Alignment:
| Q |
314 |
cagccaaagcatgttgactcccacaagcaacagtcccaagtttaatctgcacaacattcactaaagcaagcataagaaacgcacatcccaaaacagatcc |
413 |
Q |
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| T |
46470025 |
cagctaaaacatgttgactcccacaagctacagtcccaatcttaatctgcataac-ttcactagagcaagcataagaaacccacaccctaaaacaaatcc |
46469927 |
T |
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| Q |
414 |
aatcccagaaacaagcatcccaa |
436 |
Q |
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|||| ||||||||||||||||| |
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| T |
46469926 |
aatcttagaaacaagcatcccaa |
46469904 |
T |
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