View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13170_low_1 (Length: 776)

Name: NF13170_low_1
Description: NF13170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13170_low_1
NF13170_low_1
[»] chr4 (10 HSPs)
chr4 (253-767)||(47292305-47292819)
chr4 (19-245)||(47291763-47291991)
chr4 (310-531)||(56209616-56209838)
chr4 (313-455)||(45863436-45863579)
chr4 (322-455)||(45883384-45883518)
chr4 (416-525)||(54303383-54303492)
chr4 (178-237)||(47288412-47288472)
chr4 (642-717)||(45862519-45862594)
chr4 (492-525)||(45863240-45863273)
chr4 (492-525)||(45882639-45882672)
[»] chr8 (2 HSPs)
chr8 (315-530)||(7973526-7973742)
chr8 (603-756)||(7962518-7962669)
[»] chr5 (3 HSPs)
chr5 (676-756)||(35803176-35803256)
chr5 (310-485)||(10520217-10520393)
chr5 (303-366)||(35803584-35803647)
[»] chr2 (1 HSPs)
chr2 (311-455)||(24348395-24348540)


Alignment Details
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 253 - 767
Target Start/End: Original strand, 47292305 - 47292819
Alignment:
Q  253 cagcgtcttgcaaattgatttgagcggccagatacctgagcaccatggtgaggtatcatctctgcctcgaatttgcgataatttgttgaaagccgcatat 352  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47292305 cagcgtcttgcaaattgatttgagcggccagatatctgagcaccatggtgaggtatcatctctgcctcgaatttgcgataatttgttgaaagccgcatat 47292404  T
Q  353 gatcatcgtatttctgcagtgtgtcttcatatttatcgtttaaattgcggttgggctaaactcatgaaattcgaagggaaatcatgaatttcagaaaatc 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  47292405 gatcatcgtatttctgcagtgtgtcttcatatttatcgtttaaattgtggttgggctaaactcatgaaattcgaaaggaaatcatgaatttcagaaaatc 47292504  T
Q  453 aggaaaacttattgttgcttatgttcctgcaataggaggaaaagaatattacattgcttgtgcatgtgaagaagtttatacgtctcctgaagctgatcct 552  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47292505 aggaaaacttattgttgcttatgtccctgcaataggaggaaaagaatattacattgcttgtgcatgtgaagaagtttatacgtctcctgaagctgatcct 47292604  T
Q  553 gtttccttgtttaaaggtggtctcaattctgtaattccagaagttgtagcacttggtgaatataaaagggtagtagaggtgaacaaatcgaagatcatag 652  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47292605 gtttccttatttaaaggtggtctcaattctgtaattccagaagttgtagcacttggtgaatataaaagggtagtagaggtgaacaaatcgaagatcatag 47292704  T
Q  653 tgtaatgatgactgctttgcaggacaatatttattcaaattggctggataaggtgtcttcttctacaagaaagaaaagagaagatattgaaaacttcata 752  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  47292705 tgaaatgatgactgctttgcaggacaatatttattcaaattggctggataaggtatcttcttctacaagaaagagaagagaagatattgaaaacttcata 47292804  T
Q  753 aatggagatgatgtc 767  Q
    |||||||||||||||    
T  47292805 aatggagatgatgtc 47292819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 47291763 - 47291991
Alignment:
Q  19 tctttatcctaacgaaaccaacatgaatattgacatggatatactttattgtatgacctcaacgtacattctaccaataactacagtagtcatat--gtt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||  |||    
T  47291763 tctttatcctaacgaaaccaacatgaatattgacatggatatactttaatgtatgacctcaacatacattctaccaataactacagtagtcatatatgtt 47291862  T
Q  117 gtcagaatcaagagagcaatgcacaccttcacaacacaaaaacaatatatgtaaggtgagaagaaaccctaagctaacgctcatacactattcttttcct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47291863 gtcagaatcaagagagcaatgcacaccttcacaacacaaaaacaatatatgtaaggtgagaagaaaccctaagctaacgctcatacactattcttttcct 47291962  T
Q  217 ttccaagccctaatcgactgatactgcac 245  Q
    |||||||||||||||||||||||||||||    
T  47291963 ttccaagccctaatcgactgatactgcac 47291991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 310 - 531
Target Start/End: Complemental strand, 56209838 - 56209616
Alignment:
Q  310 atctctgcctcgaatttgcgataatttgttgaaagccgcatatgatcatcgtatttctgcagtgtgtcttcatatttatcgtttaaattgcggttgggct 409  Q
    ||||||||||| | ||||||||||| |||||||||| || |||||||||||||||||||| || | ||||| |||| ||  ||||||||| |||||||||    
T  56209838 atctctgcctcaattttgcgataatatgttgaaagcagcttatgatcatcgtatttctgccgtatatcttcgtattgatactttaaattgtggttgggct 56209739  T
Q  410 aaactc-atgaaattcgaagggaaatcatgaatttcagaaaatcaggaaaacttattgttgcttatgttcctgcaataggaggaaaagaatattacattg 508  Q
    |||||| |||||||||||||| ||||| | |||||||||||||| || |||||| |||| ||||||||| || |||| ||||  ||||||||||||||||    
T  56209738 aaactcgatgaaattcgaaggcaaatcttaaatttcagaaaatctggtaaacttgttgtggcttatgttacttcaattggagttaaagaatattacattg 56209639  T
Q  509 cttgtgcatgtgaagaagtttat 531  Q
    |||||| |||||||||| |||||    
T  56209638 cttgtgtatgtgaagaaatttat 56209616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 313 - 455
Target Start/End: Complemental strand, 45863579 - 45863436
Alignment:
Q  313 tctgcctcgaatttgcgataatttgttgaaagccgcatatgatcatcgtatttctgcagtgtgtcttcatatttatcgtttaaattgcggttgggctaaa 412  Q
    |||||| | |||||| ||||||||||||||||| || ||||||| |||||||||||| || | |||||| ||| ||  ||||||||| ||||||||||||    
T  45863579 tctgccccaaatttgagataatttgttgaaagcagcttatgatcctcgtatttctgccgtatatcttcaaattgataatttaaattgtggttgggctaaa 45863480  T
Q  413 -ctcatgaaattcgaagggaaatcatgaatttcagaaaatcagg 455  Q
     || |||||||||||||  ||||| |||||||||||||||||||    
T  45863479 gctgatgaaattcgaagacaaatcttgaatttcagaaaatcagg 45863436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 322 - 455
Target Start/End: Complemental strand, 45883518 - 45883384
Alignment:
Q  322 aatttgcgataatttgttgaaagccgcatatgatcatcgtatttctgcagtgtgtcttcatatttatcgtttaaattgcggttgggctaaactc-atgaa 420  Q
    |||||||||||||||||||||||| || ||||||| |||||||||||  |||| |||||| ||| |   ||||||||||||||||||||||||| |||||    
T  45883518 aatttgcgataatttgttgaaagcagcttatgatcctcgtatttctggtgtgtatcttcaaattgacaatttaaattgcggttgggctaaactcgatgaa 45883419  T
Q  421 attcgaagggaaatcatgaatttcagaaaatcagg 455  Q
    ||||||||  | ||| | |||||||||||||||||    
T  45883418 attcgaagacagatcttaaatttcagaaaatcagg 45883384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 416 - 525
Target Start/End: Original strand, 54303383 - 54303492
Alignment:
Q  416 atgaaattcgaagggaaatcatgaatttcagaaaatcaggaaaacttattgttgcttatgttcctgcaataggaggaaaagaatattacattgcttgtgc 515  Q
    |||||||||||||| ||||| | ||||||||||||||||||||||||||  |||||||||| |||| ||| |||| |||||| |||||| | ||| ||||    
T  54303383 atgaaattcgaaggcaaatcttaaatttcagaaaatcaggaaaacttatctttgcttatgtccctgaaattggagtaaaagagtattacgtcgctagtgc 54303482  T
Q  516 atgtgaagaa 525  Q
    |||| |||||    
T  54303483 atgtaaagaa 54303492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 47288412 - 47288472
Alignment:
Q  178 agaaaccctaagctaacgctcatacactattcttttcctttcc-aagccctaatcgactga 237  Q
    |||| ||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||    
T  47288412 agaagccctaagctcacgctcatgcactattcttttcctttccaaagccctaatcgactga 47288472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 642 - 717
Target Start/End: Complemental strand, 45862594 - 45862519
Alignment:
Q  642 gaagatcatagtgtaatgatgactgctttgcaggacaatatttattcaaattggctggataaggtgtcttcttcta 717  Q
    ||||||||| |||  ||| ||||||| || | ||| ||||| |||||||||||||||||||| || ||||||||||    
T  45862594 gaagatcatcgtgagatgctgactgcattactggataatatctattcaaattggctggataaagtctcttcttcta 45862519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 492 - 525
Target Start/End: Complemental strand, 45863273 - 45863240
Alignment:
Q  492 aaaagaatattacattgcttgtgcatgtgaagaa 525  Q
    |||| |||||||||||||||||||||||||||||    
T  45863273 aaaataatattacattgcttgtgcatgtgaagaa 45863240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 492 - 525
Target Start/End: Complemental strand, 45882672 - 45882639
Alignment:
Q  492 aaaagaatattacattgcttgtgcatgtgaagaa 525  Q
    ||||||||||||||||||||| ||||||||||||    
T  45882672 aaaagaatattacattgcttgcgcatgtgaagaa 45882639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 3e-59; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 315 - 530
Target Start/End: Complemental strand, 7973742 - 7973526
Alignment:
Q  315 tgcctcgaatttgcgataatttgttgaaagccgcatatgatcatcgtatttctgcagtgtgtcttcatatttatcgtttaaattgcggttgggctaaact 414  Q
    |||||| ||||||||| ||||||||||||||||| ||||||| |||||||||||| |||| | ||  |||||||| |||||| ||| |||| ||||||||    
T  7973742 tgcctcaaatttgcgagaatttgttgaaagccgcttatgatcctcgtatttctgctgtgtatgttgttatttatcctttaaaatgcagttgagctaaact 7973643  T
Q  415 c-atgaaattcgaagggaaatcatgaatttcagaaaatcaggaaaacttattgttgcttatgttcctgcaataggaggaaaagaatattacattgcttgt 513  Q
    | ||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||  ||| ||| || ||||||||||||||||| | ||||    
T  7973642 cgatgaaattcaaagggaaatcataaatttcagaaaatcaggtaaacttattgttgcttatgtcgctgtaatgggtggaaaagaatattacataggttgt 7973543  T
Q  514 gcatgtgaagaagttta 530  Q
    |||||||||||||||||    
T  7973542 gcatgtgaagaagttta 7973526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 603 - 756
Target Start/End: Complemental strand, 7962669 - 7962518
Alignment:
Q  603 acttggtgaatataaaagggtagtagaggtgaacaaatcgaagatcatagtgtaatgatgactgctttgcaggacaatatttattcaaattggctggata 702  Q
    ||||||| |||||| | ||||||  ||||| |||||||| ||||| || |||  | || |||||| |||||||||| |||||||||||||||||||||||    
T  7962669 acttggtaaatatagatgggtag--gaggtcaacaaatcaaagattatcgtgagacgacgactgcattgcaggacagtatttattcaaattggctggata 7962572  T
Q  703 aggtgtcttcttctacaagaaagaaaagagaagatattgaaaacttcataaatg 756  Q
    |||| ||||||||||   ||||||||| ||||||||||||||| ||||||||||    
T  7962571 aggtctcttcttctattggaaagaaaaaagaagatattgaaaatttcataaatg 7962518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 676 - 756
Target Start/End: Complemental strand, 35803256 - 35803176
Alignment:
Q  676 acaatatttattcaaattggctggataaggtgtcttcttctacaagaaagaaaagagaagatattgaaaacttcataaatg 756  Q
    ||||||| |||||||||||||||||||| || |||||||||| | | ||||||||||||||  || |||||||||||||||    
T  35803256 acaatatctattcaaattggctggataaagtctcttcttctagagggaagaaaagagaagaagttcaaaacttcataaatg 35803176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 310 - 485
Target Start/End: Original strand, 10520217 - 10520393
Alignment:
Q  310 atctctgcctcgaatttgcgataatttgttgaaagccgcatatgatcatcgtatttctgcagtgtgtcttcatatttatcgtttaaattgcggttgggct 409  Q
    |||||| |||| |||||||| |||||| |||||||| |||||||||| | ||||||| || || | |||||||||  | | ||||| ||| |||||||||    
T  10520217 atctcttcctcaaatttgcggtaatttcttgaaagcagcatatgatccttgtatttccgctgtttatcttcatatcgaccatttaagttggggttgggct 10520316  T
Q  410 aaac-tcatgaaattcgaagggaaatcatgaatttcagaaaatcaggaaaacttattgttgcttatgttcctgcaat 485  Q
    |||| | |||| |||| |||| ||||  | |||||||||||||| || ||| |  |||| |||||||| ||| ||||    
T  10520317 aaacttgatgagattcaaaggcaaattttaaatttcagaaaatcggggaaaatggttgtggcttatgtcccttcaat 10520393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 303 - 366
Target Start/End: Complemental strand, 35803647 - 35803584
Alignment:
Q  303 aggtatcatctctgcctcgaatttgcgataatttgttgaaagccgcatatgatcatcgtatttc 366  Q
    |||||| ||||||||||  |||||||||| |||| ||||||||||| ||||||| |||||||||    
T  35803647 aggtattatctctgcctgaaatttgcgattatttcttgaaagccgcttatgatcctcgtatttc 35803584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 311 - 455
Target Start/End: Original strand, 24348395 - 24348540
Alignment:
Q  311 tctctgcctcgaatttgcgataatttgttgaaagccgcatatgatcatcgtatttctgcagtgtgtcttcatatttatcgtttaaattgcggttgggcta 410  Q
    ||||| |||| ||| ||||| ||||| |||||||| || ||||||| ||| |||||||  || | ||| |||||| || ||||| |||| || |||| ||    
T  24348395 tctctacctcaaatatgcgagaattttttgaaagcagcctatgatcctcgaatttctggggtctatctccatattgatagtttagattgtgggtggggta 24348494  T
Q  411 aactc-atgaaattcgaagggaaatcatgaatttcagaaaatcagg 455  Q
    || |  | |||||||||||| | ||| ||||||||| |||||||||    
T  24348495 aagtagaagaaattcgaaggcacatcttgaatttcaaaaaatcagg 24348540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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