View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13170_low_10 (Length: 257)
Name: NF13170_low_10
Description: NF13170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13170_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 46740938 - 46740744
Alignment:
| Q |
1 |
cctctccactaaaagagtccacatcatttccattatgctactaaagctaaaggatgatgatttgtcggggatattataaatgtataccatgaaatgaatg |
100 |
Q |
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| T |
46740938 |
cctctccactaaaagagtccacatcatttccattatgctgctaaagctaaaggatgatgatttgtcggggatattataaatgtatatcatgaaatgaatg |
46740839 |
T |
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| Q |
101 |
gagaatgacggttttgtttactagtgcatgctactagactagactagaatgtaaccaaatagagttactaaactataggtatgcaatgggtagga |
195 |
Q |
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| T |
46740838 |
gagaatgacagttttgtttactagtgcatgctactagactagactagaatgtaaccaaatagagttactaaactatagttatgcaatgggtagga |
46740744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 46740664 - 46740612
Alignment:
| Q |
194 |
gagaaattgaatttcattcacatctccgacatatttgagtatctctgcttcat |
246 |
Q |
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| T |
46740664 |
gagaaattgaatttcattcacatctccaacatatttgagtatctctgcttcat |
46740612 |
T |
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