View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13170_low_2 (Length: 689)
Name: NF13170_low_2
Description: NF13170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13170_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 269 - 674
Target Start/End: Complemental strand, 8692535 - 8692128
Alignment:
| Q |
269 |
tttaataatagctggtcgggtaattaagcacccattatt---ttgattatgaattaagcaggcattattgatgtaagtagatttaatagagatataatta |
365 |
Q |
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| T |
8692535 |
tttaataatagctggtcggttaattaagcacccattattattttgattatgaattaagcaggcattattgatgtaagtagatttaatagagatataatta |
8692436 |
T |
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| Q |
366 |
gattcatagaaaagattgatgagatgccaagaaagtattaggagtataatcccaaatataagaagcttgtttgcgttaattgagtgaaatggtgtgtgaa |
465 |
Q |
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| T |
8692435 |
gattcatagaaaagattgatgagatgccaagaaagtattaggagtaaaatcccaaatataagaagcttgtttgcgttaattgagtgaaatggtgtgtgaa |
8692336 |
T |
|
| Q |
466 |
gtaatattgtttggtcgaacttttgtatcacacgtttaaaaatttgattaagtccttctgatggtcaacataagatatacatggtagaataaatgactct |
565 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8692335 |
gtaatattgtttggtcgaacttttgtatcacacgtttaaaaatttgatcaagtccttctgatggtcaacataagatagacatggtagaataaatgactct |
8692236 |
T |
|
| Q |
566 |
atatctcataaaaaatctcttatttacannnnnnnnctaccttaaaataattatcactttagaatattaatcataagtttactaaacaacttgttaagga |
665 |
Q |
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| T |
8692235 |
atatctcataaaaagtctcttatttcca-tttttttctactttaaaataattatcactttagaatattaatcataagtttactaaacaacttgttaaaga |
8692137 |
T |
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| Q |
666 |
tatttatat |
674 |
Q |
| |
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| T |
8692136 |
tatttatat |
8692128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 8692828 - 8692575
Alignment:
| Q |
18 |
agaggaaaatgactagtgatgtgagaatgaattttagtgccattttgtgttacaattgaaccttgtttagattggttagttaaatgtgatatgatggaag |
117 |
Q |
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|||||||||||||||||||||| ||||||| |||| ||||||||||| ||| |||||||||||||||||||| |||| ||||||||||||||||| ||| |
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| T |
8692828 |
agaggaaaatgactagtgatgttagaatgagttttggtgccattttgggtttcaattgaaccttgtttagatatgttacttaaatgtgatatgatgaaag |
8692729 |
T |
|
| Q |
118 |
aagagaatttccaaagctcaaatttgatgaaaatgctaatgggttttgttacttatatagag--ttcccacatgcaaattttttgggtcaaacccccaca |
215 |
Q |
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| T |
8692728 |
aagagaatttccaaagctcaaatt-gatgaaaatgctaatgggttttgttatttatatagagagttcccacatgcaagttttttgggtcaaacccccaca |
8692630 |
T |
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| Q |
216 |
tacaatttatgcttagctattttgtttcttttctttgctgtaattgtcccatgtt |
270 |
Q |
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| T |
8692629 |
tacaatttatgcttaactattttgtttcttttctttgctgtaattgtcccatgtt |
8692575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 84 - 264
Target Start/End: Original strand, 8696487 - 8696667
Alignment:
| Q |
84 |
ttagattggttagttaaatgtgatatgatggaagaagagaatttccaaagctcaaatttgatgaaaatgctaatgggttttgttacttatatagagttcc |
183 |
Q |
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|||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8696487 |
ttagataggttacttaaatgtgatatgatgaaagaagagaatttccaaagctcaaatttgatgaaaatgctaatgggttttgttacttatatagagttcc |
8696586 |
T |
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| Q |
184 |
cacatgcaaattttttgggtcaaacccccacatacaatttatgcttagctattttgtttcttttctttgctgtaattgtcc |
264 |
Q |
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| T |
8696587 |
cacatgcaaattttttgggtcaaatccccacatacaatttatgcttagctattttgtttcttttctttgctgtaattgtcc |
8696667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 100 - 270
Target Start/End: Complemental strand, 8678539 - 8678359
Alignment:
| Q |
100 |
aatgtgatatgatggaagaagagaatttccaaagctcaaatttgatgaaaatgctaatgggttttgttacttatatagag-------------ttcccac |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||| |
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| T |
8678539 |
aatgtgatatgatggaagaagagaatttccaaagctcaaatttgatgaaaatgctaatggggtttgttgcttatatagagatttcctaacatattcccac |
8678440 |
T |
|
| Q |
187 |
atgcaa-attttttgggtcaaacccccacatacaatttatgcttagctattttgtttcttttctttgctgtaattgtcccatgtt |
270 |
Q |
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| T |
8678439 |
atgcaatatttttttggtcaaatccccacatgcaa-ttatgcttagctattttgtttctt---tttgctgtaattatcccatgtt |
8678359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 8674597 - 8674446
Alignment:
| Q |
18 |
agaggaaaatgactagtgatgtgagaatgaattttagtgccattttgtgttacaattgaaccttgtttagattggttagttaaatgtgatatgatggaag |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||| |||||||||||||||||| |
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| T |
8674597 |
agaggaaaatgactagtgatgtgagaatgaatttttgtgccattttgtgttacaattgaacctt-----ggttggtt-----aatgtgatatgatggaag |
8674508 |
T |
|
| Q |
118 |
aagaga-atttccaaagctcaaatttgatgaaaatgctaatgggttttgttacttatataga |
178 |
Q |
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| T |
8674507 |
aagagagcttttcaatgctcaagtttgatgaaaatgctaatggggtgtgttacttaaataga |
8674446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 8687869 - 8687938
Alignment:
| Q |
18 |
agaggaaaatgactagtgatgtgagaatgaattttagtgccattttgtgttacaattgaaccttgtttag |
87 |
Q |
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| T |
8687869 |
agaggaaaatgattagtgatgtgagaatgaatttttgttccattttgtgttacaattgaaccttggttag |
8687938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 424 - 489
Target Start/End: Original strand, 8696924 - 8696988
Alignment:
| Q |
424 |
taagaagcttgtttgcgttaattgagtgaaatggtgtgtgaagtaatattgtttggtcgaactttt |
489 |
Q |
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| T |
8696924 |
taagaagcttgtttttcttatttgagtgaagtggtgtgtgaagtaatattg-ttggtcaaactttt |
8696988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 456
Target Start/End: Complemental strand, 8674187 - 8674112
Alignment:
| Q |
384 |
atgagatgccaagaaagtattaggagtataatcccaaatataagaagcttgt----ttgcgttaattgagtgaaatg |
456 |
Q |
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| T |
8674187 |
atgagataccaagaaattattaggagtaaaatccc-aatttaagaagcttgtttacttgccttaattgagtgaaatg |
8674112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 424 - 476
Target Start/End: Complemental strand, 8677756 - 8677704
Alignment:
| Q |
424 |
taagaagcttgtttgcgttaattgagtgaaatggtgtgtgaagtaatattgtt |
476 |
Q |
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|||||||||||||| ||| ||||||||| |||||| ||||||||||||||| |
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| T |
8677756 |
taagaagcttgtttttcttatttgagtgaagtggtgtatgaagtaatattgtt |
8677704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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