View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13170_low_5 (Length: 530)
Name: NF13170_low_5
Description: NF13170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13170_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 15 - 442
Target Start/End: Original strand, 2566276 - 2566703
Alignment:
| Q |
15 |
aaggtgccctaggtgtttacactacttccataagtggaaaagcttttgaatccattattaggctatgtgatgatgaggcatttacaagaaaattagttat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2566276 |
aaggtgccctaggtgtttacactacttccataagtggaaaagcttttgaatccattattaggctatgtgatgatgaggcatttacaagaaaatcagttat |
2566375 |
T |
|
| Q |
115 |
agtgtgttgagtaatagctgggagagttctttgtcctttggaagaaattcaagaaaatgttgattccgggtttgattcattagctggaagaattagtgat |
214 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2566376 |
agtgtgtagagtaatagctgggagagttctttgtcctttggaagaaattcaagaaaatgttgattccgggtttgattcattagctggaagaattagtgtt |
2566475 |
T |
|
| Q |
215 |
tattcagatattgaggaactatacttgttgaatcctaaagctttgcttccttgcttaatggtaatctacaaacaacaaaagatggaaattagaaggcgtc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2566476 |
tattcagatattgaggaactatacttgttgaatcctaaagctttgcttccttgctttgtggtaatctacaaacaacaaaagatggaaattagaaggcgtc |
2566575 |
T |
|
| Q |
315 |
attcaattgcttaagagtgtgtttgtacgaaaaattatagagaaattgaaattctatgatattgaaatgcttcatttttaattcctttcatttacaaaat |
414 |
Q |
| |
|
| |||||||||||| |||||||||| | | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2566576 |
actcaattgcttaacagtgtgtttggatggaaaattatagagaaattaaaattctatgatattgaaatgcttcatttttaattcctttcatttacaaaat |
2566675 |
T |
|
| Q |
415 |
ttgctatttaggtcaagtagttgaattc |
442 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
2566676 |
ttgctatttaggtcaagtagttgaattc |
2566703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 6 - 310
Target Start/End: Original strand, 2552787 - 2553088
Alignment:
| Q |
6 |
aggaatttcaaggtgccctaggtgtttacactacttccataagtggaaaagcttttgaatccattattaggctatgtgatgatgag-gcatttacaagaa |
104 |
Q |
| |
|
|||||||||||||||| |||| |||||||| | ||||| |||||||||||| ||||| || ||||| ||||| |||||| ||| ||||||||||||| |
|
|
| T |
2552787 |
aggaatttcaaggtgcattaggagtttacacaagttccacaagtggaaaagcctttgattcaattat---gctatctgatga-gagagcatttacaagaa |
2552882 |
T |
|
| Q |
105 |
aattagttatagtgtgttgagtaatagctgggagagttctttgtcctttggaagaaattcaagaaaatgttgattccgggtttgattcattagctggaag |
204 |
Q |
| |
|
| ||||||| ||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||| || ||||||||||| |||| || |
|
|
| T |
2552883 |
aggcagttataatgtgtagagtaatagctgggagagttcattgtccttttgaagaaattcaagaaaaaattgattcaggatttgattcatttgctgaaaa |
2552982 |
T |
|
| Q |
205 |
aattagtgattattcagatattgaggaactatacttgttgaatcctaaagctttgcttccttgcttaatggtaatctacaaacaacaaaagatggaaatt |
304 |
Q |
| |
|
|| |||||| ||||| ||||||||||||||| |||||||||||||||||| |||| |||||||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
2552983 |
gataagtgatcattcaaatattgaggaactatgtttgttgaatcctaaagctctgctcccttgctttgtggtaatctacaaacaaaaatagatggaaatt |
2553082 |
T |
|
| Q |
305 |
agaagg |
310 |
Q |
| |
|
| |||| |
|
|
| T |
2553083 |
aaaagg |
2553088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University