View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13170_low_8 (Length: 493)
Name: NF13170_low_8
Description: NF13170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13170_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 166 - 473
Target Start/End: Complemental strand, 33882404 - 33882097
Alignment:
| Q |
166 |
atgtgtttccaatccaatcactgcaccttgagctatcatatcaagaccaaagaatcttttaatctcttcatccaatgattcaagctgttcttgatactgt |
265 |
Q |
| |
|
|||||||||||||||| || |||| ||||||||||| ||||||| |||||||||||||||||| ||||||||||| |||||| | ||||||||||||| |
|
|
| T |
33882404 |
atgtgtttccaatccagtccttgcaatttgagctatcaaatcaagatcaaagaatcttttaatcttttcatccaatgcttcaagttcttcttgatactgt |
33882305 |
T |
|
| Q |
266 |
gcttttttgtaacaacaattccaccactggattttgtcttcattagaacatttaagaacaagttcttttccatctttcatttgtttgattattctcttcg |
365 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33882304 |
gcttttttgtaccaacaattccaccactggattttgtcttcattagaacattttagaacaagttcttttccatctttcatttgtttgattattctctttg |
33882205 |
T |
|
| Q |
366 |
tttcattaggtgatcggtccaacttcttgttgagttcatctatttgattgatcaatggtgctaatgattcgagagtttcttttaagcgttctagagttgg |
465 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33882204 |
tttcattaggtgatcggttcaacttcttgttgagttcatctatttgattgatcaatggtgctaatgattcgagagtttcttctaagcgttctagagttgg |
33882105 |
T |
|
| Q |
466 |
tttgaact |
473 |
Q |
| |
|
|||||||| |
|
|
| T |
33882104 |
tttgaact |
33882097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 473
Target Start/End: Complemental strand, 33866739 - 33866278
Alignment:
| Q |
15 |
tcaacaatatctccttcaacttattgaaagtctcatccaacccaacaataaaaccaggtggttcaggaggccgacaaatattctct-aattcaatccttt |
113 |
Q |
| |
|
|||||||| || |||||||| ||| |||| |||||||||||||||||||||||||||||| ||| ||| ||||| | |||| ||||||| |||| |
|
|
| T |
33866739 |
tcaacaatctcatcttcaactcattcaaaggaccatccaacccaacaataaaaccaggtggttgaggtggcaaacaaacac-ctcttaattcaactcttt |
33866641 |
T |
|
| Q |
114 |
cattcctcacaagaata--ctt-cgaatttcagcacgaaactctttaatctccaaatgtgtttccaatccaatcactgcaccttgagctatcatatcaag |
210 |
Q |
| |
|
|| | ||| ||| | || ||| | || |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33866640 |
cacttctcccaacattagccttactaaattcagcacgaaactctttaatctccaaaagtgtttccaatccagtcactgcaccttgagctatcatatcaag |
33866541 |
T |
|
| Q |
211 |
accaaagaatcttttaatctcttcatccaatgattcaagctgttcttgatactgtgcttttttgtaacaacaattccaccactggattttgtcttcatta |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33866540 |
accaaagaatcttttaatctcttcatccaatgcttcaagttgttcttgatactgtgcttttttgtaacaacaattccaccactggattttgtcttcatta |
33866441 |
T |
|
| Q |
311 |
gaacatttaagaacaagttcttttccatctttcatttgtttgattattctcttcgtttcattaggtgatcggtccaacttcttgttgagttcatctattt |
410 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| | | | || |||||||| ||||| | ||||| ||||| |||||||||||||||| |
|
|
| T |
33866440 |
gaacattttagaacaagttcttttccatctttcatttgtttgatcagtgtttttgtttcattgggtgaatgatccaatttcttcttgagttcatctattt |
33866341 |
T |
|
| Q |
411 |
gattgatcaatggtgctaatgattcgagagtttcttttaagcgttctagagttggtttgaact |
473 |
Q |
| |
|
|||||||||||||| ||||||||| || || ||| ||| | ||||||||||||||||||| |
|
|
| T |
33866340 |
gattgatcaatggtcctaatgattgaagtgtagcttctaatctatctagagttggtttgaact |
33866278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 33882596 - 33882446
Alignment:
| Q |
1 |
ctcattcttcttactcaacaatatctccttcaacttattgaaagtctcatccaacccaacaataaaaccaggtggttcaggaggccgacaaatattctct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33882596 |
ctcattcttcttactcaacaatatctccttcaacttattgaaagtctcatccgacccaacaataaaaccaggtggtttaggaggccgacaaatattctct |
33882497 |
T |
|
| Q |
101 |
aat------tcaatcctttcattcctcacaagaatacttcgaatttcagca |
145 |
Q |
| |
|
||| |||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
33882496 |
aattcaaattcaatcctttcagtcctcacaagaacacttcgaatttcagca |
33882446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University